Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0605 ATGCTTCAAGAGTTGTATCTTAGAGACAATGATTTGGAAGGTTCTATTCTCAAGGAGATAGCAGATCTTGGTGAACTAGAAGTATTAACCTTGGGAGTTAACAAGCTAAGTGGACCAATTCCTCCAGATATATTCAACATGTCAACTTTGACATACTTAGCAATAAAATTCAGTGGGGTTATACCTAATTCACTTGGAAACTTAAGGGACCTCCAAAGTCTTTGCTTTTATGACAATATTATGAGTGCTTCCACTTCTGAAGTAAGTTTTCTCACTTCTTTGACATACTGTAAACATCTAAAACTTCTGGACCTATCACGTAATCCTTTGCTTATAACACTTCCCAAGTCCATTGGAAATCTATCGGATTCACTGCAACTGTTCAGTGTAAGTTCTTGTGGTATTAATGGCAATATACCTTCAGAAATTGGGAATCTAAGTAACTTAGTCACATTAACTTTAAGCAAGAATAATTTGAATGTGCCAATTCCATCTACAATTGATCAGTTACAGAATCTTCAGTGCTTGAGTCATGCAGACAATAGGCTACAAGGCTCCATTGTTGATAAGCTTCACAAAATTGGAAGCCTAAATAACCTTCATCTAGATTTCTTGCAAAGGTTGAACATAATGATAGATGTGACATCAACATTGGAATATCTTCATTATGGTACTTCATCTTCTATGGTTCATTGTGATGTGAAACCTAGTAATATTTTGATGGATGAAGATATGGTTGCCCACCTTGGTGATTTTGGCATTACCAAGCTCTTAAGTGATAGTCAATTTGAAGTAAACACAAGGACACTTACTACACTTGGCTACATTGCACGGGAGAATGCCTCCATGCCATCAAATGTCTTAGGTTCCATCAGCTTTGATGTTGGGCAGAGATCATTGAAGGACTAG 909 0.3685 MLQELYLRDNDLEGSILKEIADLGELEVLTLGVNKLSGPIPPDIFNMSTLTYLAIKFSGVIPNSLGNLRDLQSLCFYDNIMSASTSEVSFLTSLTYCKHLKLLDLSRNPLLITLPKSIGNLSDSLQLFSVSSCGINGNIPSEIGNLSNLVTLTLSKNNLNVPIPSTIDQLQNLQCLSHADNRLQGSIVDKLHKIGSLNNLHLDFLQRLNIMIDVTSTLEYLHYGTSSSMVHCDVKPSNILMDEDMVAHLGDFGITKLLSDSQFEVNTRTLTTLGYIARENASMPSNVLGSISFDVGQRSLKD 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0605 302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Dere12g0605 302 Pfam Protein kinase domain 206 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0605 302 Gene3D Ribonuclease Inhibitor 1 55 IPR032675 -
Dere12g0605 302 Gene3D Ribonuclease Inhibitor 126 199 IPR032675 -
Dere12g0605 302 Gene3D Ribonuclease Inhibitor 56 125 IPR032675 -
Dere12g0605 302 SUPERFAMILY L domain-like 2 221 - -
Dere12g0605 302 Gene3D Transferase(Phosphotransferase) domain 1 200 294 - -
Dere12g0605 302 PANTHER OS04G0122200 PROTEIN 195 281 - -
Dere12g0605 302 SUPERFAMILY Protein kinase-like (PK-like) 185 283 IPR011009 -
Dere12g0605 302 ProSiteProfiles Protein kinase domain profile. 17 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0605 302 FunFam Leucine-rich repeat receptor protein kinase EMS1 90 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0605 Dere-ChrDere12 10445846 10454649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0605 180 279 Receptor kinase-like Gene Family AT3G47570 39.623 1.95e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere12g0605 Pkinase 9.5e-13 CL0016