Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0586 ATGCTTTGGGACGACGACTTATCCACCATGCTCATAAGTACTGTTACGAGCCATAAATTAGACTCACCCTGCATGTTGGAGCTTGTAATGCTACCAGTGGAAATCGGGTTTTTATCAATCTTGTTAATCCAACTTCTGAAAAAATGTATGGACCTGATCAGGAAGCAGATGAACAAAGTCTCAGATCAAAACACAGAGATTCAATGTCATCCCACAGTAGTAAAACTTGGTTTTGCTTACAAAACCAGCATATTTTGCTCCACTTTACTGCTTGCTGTTCATATCTTATTGCTTCTAATGTTGATAAATGGTGAGACTCGGTGCAACTCTAAACTTAAGGCATTTTCATCAGAGATAATTCTGGTATTATCATGGGTGATCACACTGATATCAGTATGGAAGGTGCCAAAATGCTACCCTAAATTCCCTTGGACGGTAAGATCATGGTGGATCTGCAGTTTCTTTATGTGCATTGTCAACTTAGCCTTTCATGCCCATTTCAGTATCAGCAAACAGAGAAAGTTTGGAATGAGAGAATATGCAGACTTGCTTGGTCTACTTGCTTCAACATGCTTATTGGGCATTTCAGTAAGGGGAAGAACAGGAATTGTGTTGATTGCCACAAACGGCATCTCTGAGCCACTTCTGAGTGAGAAAACTGGCAAGGATTCAGAACCATCCAAAAAGGAGTCTTTATATGGAAAAGCTTCTTTCCTTCAACTCATTACCTTTTCATGGCTCAATCCCTTGTTTGCTGTAGGATATAAGAAACCCCTTGAACAAAATGACATTCCTGATGTTTACATCAAAGACTCTGCAGAATTTCTATCCTCCTCCTTTGATGAGAGCCTAAGACGAGTCAAGGAGGTCGATAGGACCACAAACCCATCAATCTACAAGGCAATCTATCTATTTGCTAGGAAGAAGACTCTGATCAATGCAGGTTTTGCAGTAGTAAATGCTGGAGCATCGTATGTTGGCCCGTACTTGATCACTGACTTTGTGAATTTCCTAGGTGAGAAGGGGAACCGTGGGTTGAACCAAGGATACATGTTGTCACTAGCATTCTTATGTGCCAAAATGGTTGAGACAATAACTCAGAGGCAATGGATATTCGGTGCTCGCCAATTAGGCCTTCGTCTCAGAGTGGCATTGATAACACACATATACAAGAAGGGCTTGATTCTGTCTTGTAGAACGCGCCAAAGTCACACTGGTGGTGAGATAATGAACTATATGAGTGTCGACGTGCAGAGAATCACAGATTTCATGTATTACATAAACGTAATATGGATGCTTCCTGTGCAAGTAACCTTAGCTGTCTACATTTTGCATACAAATATTGGTTTGGGTGCATTGGCTGCATTAGCTGCTACCCTGACAGTTATGGCTTTGAACATACCTCTTACAAGAATACAGAAGAGATACCAGTCTAAGATCATGGAGGCTAAGGATTGTAGGATGAAAGCTACATCAGAAGTCCTTAGAAACATGAAGACTTTGAAACTTCAAGCATGGGACAGTGAATTTCTACACAGGCTAGAAGAATTGAGGGCAACAGAGTACAATTGGTTATGGAAGTCATTAAAACAAGGAGCATTTTCTGCTTTTATATTTTGGGGATCTCCCACATTTATTTCTGTGATAACTTTTTGGGCATGTACCTTGATGGGGATTGAACTAACAGCCGGAAGAGTCTTATCTGCATTCGCCACATTTCGGATGTTACAGGACCCTATATTTAGCTTACCTGATTTACTCAATGTTATTGCTCAAGGAAAAGTGTCAGTTGACAGGATTGCTTCTTATCTCAGGGAAGAAGAAATTCAACATGATGCCATTGAGTACGTTGAAAAGGACCAAACAGAGTTTGCCGTAGTTATTGACAAAGGAAGATTCAGTTGGGATTCTGAGTCAAGCAGTCCAACCCTTGACGGAATAGAGTTAAGAGTCAAAATAGGAATGAAGGTGGCAATTTGTGGGACTGTCGGTTCCGGAAAGTCTAGTTTGCTTGCCGGCATTTTGGGCGAAATGTATAAACAGTCTGGGACTGTCAAGATCAGTGGAACAAAAGCTTACGTTCCGCAGTCACCGTGGATACTGACTGGAAATTTTAGGGAGAATATTACCTTTGGGAAGGAATACAATCATGCCAAGTATGAGAAGACTATTGAAGCATGTGCATTGAAAAAGGACTTTGAGCTATTCTCCCATGGTGACCTCACAGAGATTGGAGAAAGAGGGATCAATATGAGTGGAGGACAGAAGCAAAGAGTACAGATTGCTCGTTCAGTTTATCAAGATGCTGACATATATCTTTTTGATGACCCTTTCAGTGCTGTTGATGCTCATACTGGAAGCCACCTCTTCAAGGAGTGCCTTATGGGGGTTCTCAGAGAAAAAACTGTACTTTATGTCACCCACCAAGTTGAGTTTCTTCCAGCAGCAGACCTTATTCTGGTGATGCAAAATGGAAGGATTACACAAGCCGGAACGTTTGGAGAACTTCTAAAGCAAAATATAGGATTTGAAGTTTTAGTTGGAGCTCACAGCCAAGCTTTAGAGTCAATTCTCATGGTTGAAAATTCAAGCAGGGCAACTCTAAATCCAACACCTGAAGGTGAATCTAATACCAATTCCAAGTTAAATGCGGAACTTGCACCCACACAAAATGACACAGAGCAAGTTAGTACCCCAGAAATCCTAGAAAAAGAGGGAAAACTTGTGCAGGATGAAGAAAGAGAAAGAGGAAGCATTTCAAAAGAAGTTTACTGGTCTTACTTGACCACTGTCAAAAGGGGAGCCCTGGTTCCAGTCATTATCTTGGCCCAGTCTTCATTCCAAGTACTTCAGGTTGCCAGTAACTATTGGATGGCATGGGTTTGTCCTACATCAAGTGATGCTAAGCCTATATTTGACATGAATTTCATACTACTTATTTATATGATACTTTCTGTTGGGAGTGCACTTGGTGTGCTGCTAAGAGCTATGCTAGTGGCAAAAGTTGGACTTTGGACTGCACAGAAACTATTTATCAGCATGATGCATAGTGTAATCCGTGCACCCATGTCATTTTTTGATTCAACACCAACTGGAAGAATTTTGAACAGGGCCTCCACAGATCAAAGTGTTCTAGACTTGGAAATGGCAACCAAACTAGGATGGTGTGCTTTCTCAGTAATACAGATTATGGGTACCATTGCGGTAATGTCGCAGGTGGCATGGCAAGTATTTGTTATCTTCATTCCAGTAATGGCAATCTGCGTATGGTATCAACGATACTATACACCAACAGCAAGAGAACTGGCCCGCTTAGCACAAATAGAAATTGCTCCAATTCTGCATCATTTTGCAGAATCACTTGCAGGAGCAGCATTGATCCGAGCTTTTGATCAAGAAGGCCGTTTTGTATACTCAAATCTTGGTCTTGTGGACAACTACTCAAAGCCATGGTTCCATAACGTTTCTGCAATGGAATGGCTTTCTTACAGATTGAATTTACTATCCAATTTTGTTTTTGCCTTCTCACTAGTTTTGCTAGTAGTCCTCCCAGAAGGAATCATCAACCCAAATATTGCAGGTTTGGCAGTAACTTACGGAATCAATTTGAATGTCTTGCAAGCTCAAGTTATATGGAACATATGTAATGCCGAAAATAAGATGATATCTGTTGAAAGAATTCTTCAGTACTTAAATATCAAAAGTGAAGCAGCACTTGTGATTGAAGATTGGAGGCCACCAAACAACTGGCCTGAAATTGGAACAATATGTTTCAGAAATTTGCAGATACGTTATGCTGAACATCTACCATCTGTCCTGAAAAACATTACTTGCACATTTCCCGGAAGGAAGAAAATTGGTGTGGTAGGACGAACTGGGAGTGGAAAATCAACCCTCATACAGGCCATTTTCAGGATTGTTGAACCCTGGGAGGGAAGCATCATAATTGATGATTTGGATATAAGCAAGATTGGTCTACATGACTTAAGGTTGAGGCTTAGCATAATTCCACAGGATCCAACAATGTTTGAAGGCACAATTAGAGGAAACCTAGACCCACTACAGCAATACTCTGACAAAGAAGTGTGGGAGGCTCTAGATAAATGTCAGCTTGGTCAGCTGGTGAGATCAAAGGAAGAGAAATTGGATTCTTCAGTGGTTGAGAATGGAGAAAACTTGAGCGCAGGCCAAAGGCAATTAGTTTGCCTTGGAAGAGCCTTGCTGAAGAAGAGTAGCGTACTTGTGCTGGATGAAGCAACAGCATCAGTTGATTCTGCAACTGATGGAGTGATACAGAAGATCATCAGTCAAGAATTCAAAGATAGGACTGTTGTCACAATAGCACATCGAATCCATACCGTTATCAATAGTGATTTGGTTTTGGTCTTGAGTGATGGGAGAATTGCAGAGTTTGATTCACCATTGAAGTTGCTTGAAAGAGAAGATTCTTTCTTCTCTAAACTTATTAGGGAGTGCTCTAGAAGATCACAAAACTTGAACAGCAAGCTTGGCTAA 4515 0.4097 MLWDDDLSTMLISTVTSHKLDSPCMLELVMLPVEIGFLSILLIQLLKKCMDLIRKQMNKVSDQNTEIQCHPTVVKLGFAYKTSIFCSTLLLAVHILLLLMLINGETRCNSKLKAFSSEIILVLSWVITLISVWKVPKCYPKFPWTVRSWWICSFFMCIVNLAFHAHFSISKQRKFGMREYADLLGLLASTCLLGISVRGRTGIVLIATNGISEPLLSEKTGKDSEPSKKESLYGKASFLQLITFSWLNPLFAVGYKKPLEQNDIPDVYIKDSAEFLSSSFDESLRRVKEVDRTTNPSIYKAIYLFARKKTLINAGFAVVNAGASYVGPYLITDFVNFLGEKGNRGLNQGYMLSLAFLCAKMVETITQRQWIFGARQLGLRLRVALITHIYKKGLILSCRTRQSHTGGEIMNYMSVDVQRITDFMYYINVIWMLPVQVTLAVYILHTNIGLGALAALAATLTVMALNIPLTRIQKRYQSKIMEAKDCRMKATSEVLRNMKTLKLQAWDSEFLHRLEELRATEYNWLWKSLKQGAFSAFIFWGSPTFISVITFWACTLMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASYLREEEIQHDAIEYVEKDQTEFAVVIDKGRFSWDSESSSPTLDGIELRVKIGMKVAICGTVGSGKSSLLAGILGEMYKQSGTVKISGTKAYVPQSPWILTGNFRENITFGKEYNHAKYEKTIEACALKKDFELFSHGDLTEIGERGINMSGGQKQRVQIARSVYQDADIYLFDDPFSAVDAHTGSHLFKECLMGVLREKTVLYVTHQVEFLPAADLILVMQNGRITQAGTFGELLKQNIGFEVLVGAHSQALESILMVENSSRATLNPTPEGESNTNSKLNAELAPTQNDTEQVSTPEILEKEGKLVQDEERERGSISKEVYWSYLTTVKRGALVPVIILAQSSFQVLQVASNYWMAWVCPTSSDAKPIFDMNFILLIYMILSVGSALGVLLRAMLVAKVGLWTAQKLFISMMHSVIRAPMSFFDSTPTGRILNRASTDQSVLDLEMATKLGWCAFSVIQIMGTIAVMSQVAWQVFVIFIPVMAICVWYQRYYTPTARELARLAQIEIAPILHHFAESLAGAALIRAFDQEGRFVYSNLGLVDNYSKPWFHNVSAMEWLSYRLNLLSNFVFAFSLVLLVVLPEGIINPNIAGLAVTYGINLNVLQAQVIWNICNAENKMISVERILQYLNIKSEAALVIEDWRPPNNWPEIGTICFRNLQIRYAEHLPSVLKNITCTFPGRKKIGVVGRTGSGKSTLIQAIFRIVEPWEGSIIIDDLDISKIGLHDLRLRLSIIPQDPTMFEGTIRGNLDPLQQYSDKEVWEALDKCQLGQLVRSKEEKLDSSVVENGENLSAGQRQLVCLGRALLKKSSVLVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVINSDLVLVLSDGRIAEFDSPLKLLEREDSFFSKLIRECSRRSQNLNSKLG 1504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0586 1504 SUPERFAMILY ABC transporter transmembrane region 934 1236 IPR036640 GO:0005524|GO:0016020
Dere12g0586 1504 CDD ABCC_MRP_domain1 626 826 - -
Dere12g0586 1504 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524|GO:0016887
Dere12g0586 1504 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 849 IPR003439 GO:0005524
Dere12g0586 1504 SUPERFAMILY ABC transporter transmembrane region 306 608 IPR036640 GO:0005524|GO:0016020
Dere12g0586 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1249 1486 IPR027417 -
Dere12g0586 1504 CDD ABCC_MRP_domain2 1254 1474 - -
Dere12g0586 1504 Pfam ABC transporter 644 778 IPR003439 GO:0005524
Dere12g0586 1504 ProSitePatterns ABC transporters family signature. 1393 1407 IPR017871 GO:0005524|GO:0016887
Dere12g0586 1504 CDD ABC_6TM_ABCC_D2 937 1230 IPR044726 GO:0140359
Dere12g0586 1504 Pfam ABC transporter 1273 1421 IPR003439 GO:0005524
Dere12g0586 1504 Gene3D - 1239 1492 IPR027417 -
Dere12g0586 1504 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 235 1492 - -
Dere12g0586 1504 CDD ABC_6TM_ABCC_D1 312 600 IPR044746 GO:0140359
Dere12g0586 1504 FunFam ABC transporter C family member 5 901 1237 - -
Dere12g0586 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 842 IPR027417 -
Dere12g0586 1504 FunFam ABC transporter C family member 5 611 858 - -
Dere12g0586 1504 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 316 592 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g0586 1504 FunFam ABC transporter C family member 10 294 608 - -
Dere12g0586 1504 SMART AAA_5 653 826 IPR003593 GO:0016887
Dere12g0586 1504 SMART AAA_5 1282 1467 IPR003593 GO:0016887
Dere12g0586 1504 Pfam ABC transporter transmembrane region 313 575 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g0586 1504 Pfam ABC transporter transmembrane region 948 1183 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g0586 1504 Gene3D - 621 852 IPR027417 -
Dere12g0586 1504 Gene3D ABC transporter type 1, transmembrane domain 902 1237 IPR036640 GO:0005524|GO:0016020
Dere12g0586 1504 Gene3D ABC transporter type 1, transmembrane domain 287 610 IPR036640 GO:0005524|GO:0016020
Dere12g0586 1504 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 939 1219 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g0586 1504 FunFam ABC transporter C family member 3 1239 1491 - -
Dere12g0586 1504 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1258 1490 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0586 Dere-ChrDere12 10152809 10161304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0586 609 871 Calmodulin-binding Proteins AT2G36910 27.240 4.18e-22 102