Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0583 ATGGCCGGACTAGACCTGGGTTCTGCATCTCATCACTTCGTTCATCATCAGCTTCAACGCCCTGATCTTCAATCCAACGAAGAAGATGATGACAATCACGACTTTGATGATAGCAATACTAACAATAACCCTCAAGGGCTTGACCTGACGCCAAACCCGGCCGGACCAGGCGATATCGTGGCTCGCCGGTCCAGGGGTAGACCTCCCGGTTCGAAGAACAAGACGAAGCCGCCGGTGATCATCACGCGCGAGAGTGCCAACACGCTCCGAGCACATATTCTTGAGGTGAGCAGCGGCTGCGATGTTTTCGAATCGGTGGCCACTTACGCGAGGAGGCGGCAGCGTGGGATCTGCGTCCTGAGCGGCAGCGGCACCGTCACCGACGTTACGCTGAGGCAGCCCTCGGCAGCCGGGGCTGTCGCGACGCTACGCGGGCGATTCGAGATACTGTCCTTGTCGGGATCCTTCTTGCCGCCGCCGGCTCCGCCCGGCGCGACGAGCCTGAGTATATTCCTCGCCGGAGGGCAGGGTCAAGTGGTGGGAGGAAACGTTGTTGGTGCTCTGGTGGCTTCTGGGCCTATTATTGTCATTGCTTCCTCATTTACCAACGTAGCATATGAGAGGTTGCCGTTAGATGAGGATGAATCACTACAGATGCAGCAAGGCCAATCATCTAACGGCGGCGGCGATGATGGAGTCAACAACGGGCTACCAGACCCGTCTTCGGGGCTTCCGTTCTTCAATCTACCCATTAATATGCCGCAGTTACCCGTTGACGGGTGGGTAGGAAACTCTGGTGGAAGGCCACAGCCATTCTAG 819 0.5726 MAGLDLGSASHHFVHHQLQRPDLQSNEEDDDNHDFDDSNTNNNPQGLDLTPNPAGPGDIVARRSRGRPPGSKNKTKPPVIITRESANTLRAHILEVSSGCDVFESVATYARRRQRGICVLSGSGTVTDVTLRQPSAAGAVATLRGRFEILSLSGSFLPPPAPPGATSLSIFLAGGQGQVVGGNVVGALVASGPIIVIASSFTNVAYERLPLDEDESLQMQQGQSSNGGGDDGVNNGLPDPSSGLPFFNLPINMPQLPVDGWVGNSGGRPQPF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0583 272 ProSiteProfiles PPC domain profile profile. 86 223 IPR005175 -
Dere12g0583 272 MobiDBLite consensus disorder prediction 216 231 - -
Dere12g0583 272 MobiDBLite consensus disorder prediction 17 79 - -
Dere12g0583 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 27 225 IPR014476 GO:0003680
Dere12g0583 272 MobiDBLite consensus disorder prediction 215 239 - -
Dere12g0583 272 Gene3D - 89 224 - -
Dere12g0583 272 FunFam AT-hook motif nuclear-localized protein 89 216 - -
Dere12g0583 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 217 - -
Dere12g0583 272 PIRSF ESCAROLA 4 254 IPR014476 GO:0003680
Dere12g0583 272 CDD DUF296 90 173 IPR005175 -
Dere12g0583 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 90 203 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0583 Dere-ChrDere12 10082001 10082819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0583 1 268 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.576 5.54e-98 287