Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0566 ATGAGAAAACCCAAATCAAGGGACTTTCGCAAGCGACAACGACTTCTAGAGGAAGAAGAGATTAAGCTCTTGGAATCATGGATTGAATTCCAGAAACCAGACTCTGGATCCAACCCCATGGCATTTCCTCCTTTATCCTCCAAGGAACCCATTGGTCGCATCGACGATAATATATTTTCACGCTATGCAGGTGTCACAAGGTTTGACCAGTTGCCAATTTCTAGTAAAACCAAGGATGGATTGCGAGAAGTTAAGTTTGTCAAGATGACTGATATACAGAGGGCTTCTTTGCCCCATGCACTTTTTGGACGAGATATTCTTGGTGCGGCAAAAACTGGGTCGGGAAAAACCTTGGCTTTCATTATTCCGGTCTTGGAAAAGTTATATAGAGAGAAGTGGGGGCCTGAAAATGGGGTAGGCAGCATCATCATATCCCCTACAAGAGAATTAGCTGGTCAACTGTTTGATGTTTTAAAATGTGTTGGTAAGCACCACAATTTTAGTGCTGGTCTCCTGATTGGTGGTCGCAAGGATGTTGTCATGGAGAAGCAGCGCGTAAACGAGCTGAACATTTTAATCTGCACGCCAGGTCGGCTTCTACAACACATGGATGAAACTCCAAACTTTGATTGTTCACAGATTCAGGTGTTGGTACTAGATGAGGCAGATTGTATTCTTGACCGTGGATTTAAGAAGGAACTGAATGCAATCATCTCATATCTTCCTAAGCATAGACAAACCCTGCTTTTCTCTGCAACTCAAACAAAGTCTGTTCAAGATCTTGCGAGACTAAGTTTAAAGGAGCCAGAGTATCTGAGCGTCCATGAAGAGTCTTTGACTGCCACTCCTACTCTCTTAAGACAGCTTGTGATGATTGTTCCTTTAGACCAAAAGTTAGACATGTTGTGGAGCTTCATAAAGTCACATCTTAACTCCAAAACACTTGTCTTTCTTTCCAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTACACCCTGGCATACCCTTAAAGTGCCTTCATGGGAGGATGAAGCAGGAGAGAAGGATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCATCTCCACTGACGTGGCTGCAAGAGGCCTTGACTTTAATAAGGCAGTTGAGTGGGTTGTTCAGGTTGATTGTCCTGAAAGTGTAGCATCTTACATACACAGAGTTGGTCGTACTGCTCGCTATAATTCAGGTGGGAGGTCAGTTTTATTTCTGATGCCTTCAGAGACTAAAATGCTTGAAAGATTAGAAGCAGCTAAAGTTCCAGTACATCTTAATAAGCCTAGGAAAGAACGAATGCAACCGGTTTCTGGTATGTTGGCAAATTTACTGGCCAAGTACCCAGACCTCCAGCATCGGGCACAGAGGGCCTTCATAACATATTTGAGATCCATTCTTATCCAGAAGGATAAAGAAATCTTTGATGTTATGAAATTGCCTATCGATGAATATTCAGCATCATTGGGTCTGCCAATAACCCCCAAAACCCGTTTTCTTAATCGGAACATTAAATCTAAAGCTGAGTCAACAAAACCAATTATAGCTGAACCAAAAGATTCAGACAAACAAATTACTTTGGAGGTTCCAAGAAAGAAGGTAGACCTTAGTGATTGCATGGAACAGGATGTGGAAAAAGGTCTTCTTTTGCCAGATGATTCCTCAGATGAAGGGAAAGAGAAAGCAACTGAAACTTTAGATGTCATACAAACAGTCCGCATTTCGAAGAAAAAGAAGCTCAAGATCAATATTCATAGACCGCTGGGGACTAGGGTTGTATTTGATAATGAAGGGAATGCACTACCTCCACTAGCGAGGATTGCTGATACACAAACTGGCAAGGAAACAATGCTGCTTGATCCAGAACAAAAAGCTGAATACTATATGAAGATGCGGGAGGAGTTGAAAAAGGCAGACAAGGAAGACAAGCTTCTGCAACGTCAGCGTCATAGAGAGAAGAGAATCAAGGAAAAGATGAAAAGGAAGGAACCGATTTCAGAAGAGGACGACAATGATATTTCTGGGTCAGAAGGAGATGAAACTGCAGATAGACAGCATAAAAAGAGTCGGATATATTTTGATGCTGACAGTGATGACAGTAACAAAACTGAAGTCACAGGGAAAGGGGGTATTAGCTCTAAACCTGTTACCTTAGAGGAGCAAGAAGCACTGGCTCTGAAATTGTTAAATTCCATGCACTCATAG 2238 0.4187 MRKPKSRDFRKRQRLLEEEEIKLLESWIEFQKPDSGSNPMAFPPLSSKEPIGRIDDNIFSRYAGVTRFDQLPISSKTKDGLREVKFVKMTDIQRASLPHALFGRDILGAAKTGSGKTLAFIIPVLEKLYREKWGPENGVGSIIISPTRELAGQLFDVLKCVGKHHNFSAGLLIGGRKDVVMEKQRVNELNILICTPGRLLQHMDETPNFDCSQIQVLVLDEADCILDRGFKKELNAIISYLPKHRQTLLFSATQTKSVQDLARLSLKEPEYLSVHEESLTATPTLLRQLVMIVPLDQKLDMLWSFIKSHLNSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLISTDVAARGLDFNKAVEWVVQVDCPESVASYIHRVGRTARYNSGGRSVLFLMPSETKMLERLEAAKVPVHLNKPRKERMQPVSGMLANLLAKYPDLQHRAQRAFITYLRSILIQKDKEIFDVMKLPIDEYSASLGLPITPKTRFLNRNIKSKAESTKPIIAEPKDSDKQITLEVPRKKVDLSDCMEQDVEKGLLLPDDSSDEGKEKATETLDVIQTVRISKKKKLKINIHRPLGTRVVFDNEGNALPPLARIADTQTGKETMLLDPEQKAEYYMKMREELKKADKEDKLLQRQRHREKRIKEKMKRKEPISEEDDNDISGSEGDETADRQHKKSRIYFDADSDDSNKTEVTGKGGISSKPVTLEEQEALALKLLNSMHS 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0566 745 Gene3D - 284 528 IPR027417 -
Dere12g0566 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Dere12g0566 745 Pfam Domain of unknown function (DUF4217) 452 507 IPR025313 -
Dere12g0566 745 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Dere12g0566 745 SMART helicmild6 325 408 IPR001650 -
Dere12g0566 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 420 IPR027417 -
Dere12g0566 745 PANTHER RNA HELICASE 65 570 - -
Dere12g0566 745 Pfam DEAD/DEAH box helicase 90 261 IPR011545 GO:0003676|GO:0005524
Dere12g0566 745 CDD DEADc_DDX10 77 275 - -
Dere12g0566 745 Gene3D - 55 278 IPR027417 -
Dere12g0566 745 MobiDBLite consensus disorder prediction 650 728 - -
Dere12g0566 745 SMART DUF4217_3 447 510 IPR025313 -
Dere12g0566 745 Coils Coil 639 659 - -
Dere12g0566 745 CDD SF2_C_DEAD 286 417 - -
Dere12g0566 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Dere12g0566 745 MobiDBLite consensus disorder prediction 688 714 - -
Dere12g0566 745 Pfam Helicase conserved C-terminal domain 298 408 IPR001650 -
Dere12g0566 745 SMART ultradead3 85 289 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0566 Dere-ChrDere12 9702445 9709227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0566 65 429 Eukaryotic Initiation Factors Gene Family AT3G19760 30.914 7.20e-42 155