Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0560 ATGAAGCTCACTGTTAAGACTTTGAAAGGAAGCCATTTCGAAATCAGGGTTCAACCTTCCGACACTGTTATGGCTGTCAAGAAGAATATAGAAGATGTACAGGGAAAAGATAATTACCCATGTGGACAGCAATTACTTATTCACAATGGCAAGGTTTTGAAAGATGAAACTACACTGGCAGAGAACAAGGTCTCTGAAAATGGCTTTCTTGTTGTCATGCTTAGCAAGAGTAAATCTTCAAGTTCAGGTGGGGCTTCATCCACTCAGCCTGCTAGCAATCCATCTACAATGGTATCAACTAAAAGTTCTGCTCCTCCTGCATCTGAACCTCCAGTACAAACTCAGGTTGCATTGAATAGTTCATCTGTGGCAGACGTTACAACAGCAAATGTTGCATCAAATAGTTCATCTGTGGCAGACGTTACTGCAACAAATGCGCCTACAGATACTTATGGTCAGGCAGCTTCAAATTTAGCTGTGGGTAGTAATCTTGAGCAGACTATTCAACAGATTATGGACATGGGTGGTGGCAACTGGGATAGAGAGACAGTTACTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTGTAGATTACTTGTATTCAGGAATTCCTGAAGCAGCAGAAGTTGCCATACCTGTTACTCATTATCCAGCCAGTCAAACAACTGAAACAGGTGGGGCCACTGGTGGAGCTATTTCTGGGGCACCTAATACGTCTCCTTTAAACATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGACTTGGATCTCTTGACTTCCTCAGAAACAACCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCTAATCCACAAATTCTACAGCCTGTTCTTCAGGAGCTTGGAAAGCAGAATCCTCATCTTTTAAGACTAATCCAAGAGCATCATGCTGAGTTTCTCCAGTTGATAAATGAACCAGTGGAGGGTTCTGAAGGTGACATATTTGACCAGCCTGAGCAAGACATGCCTCATTCTATCAATGTGACGCCGGCTGAACAGGAGGCAATTGCAAGGCTTGAAGCAATGGGATTTGATAGAGCCTCAGTCATTGAGGCATTTTTGGCCTGTGACCGCGATGAGCAATTGGCAGCCAACTACTTATTGGAGAATGCTGGAGATTTTGAGGATTGA 1164 0.4407 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSENGFLVVMLSKSKSSSSGGASSTQPASNPSTMVSTKSSAPPASEPPVQTQVALNSSSVADVTTANVASNSSSVADVTATNAPTDTYGQAASNLAVGSNLEQTIQQIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPEAAEVAIPVTHYPASQTTETGGATGGAISGAPNTSPLNMFPQETISGAGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPHLLRLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHSINVTPAEQEAIARLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0560 387 FunFam UV excision repair protein RAD23 homolog 334 382 - -
Dere12g0560 387 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Dere12g0560 387 NCBIfam UV excision repair protein Rad23 1 386 IPR004806 GO:0006289
Dere12g0560 387 CDD UBA1_Rad23_plant 158 207 - -
Dere12g0560 387 FunFam UV excision repair protein RAD23 1 80 - -
Dere12g0560 387 SMART uba_6 164 204 IPR015940 -
Dere12g0560 387 SMART uba_6 343 380 IPR015940 -
Dere12g0560 387 Gene3D - 334 382 - -
Dere12g0560 387 FunFam UV excision repair protein RAD23 B 252 318 - -
Dere12g0560 387 FunFam UV excision repair protein RAD23 homolog 157 207 - -
Dere12g0560 387 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Dere12g0560 387 SUPERFAMILY XPC-binding domain 259 325 IPR036353 GO:0003684|GO:0006289|GO:0043161
Dere12g0560 387 MobiDBLite consensus disorder prediction 78 116 - -
Dere12g0560 387 CDD Ubl_Rad23 1 74 - -
Dere12g0560 387 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 376 - -
Dere12g0560 387 Gene3D - 1 80 - -
Dere12g0560 387 PRINTS DNA repair protein Rad23 signature 354 368 IPR004806 GO:0006289
Dere12g0560 387 PRINTS DNA repair protein Rad23 signature 337 353 IPR004806 GO:0006289
Dere12g0560 387 PRINTS DNA repair protein Rad23 signature 288 310 IPR004806 GO:0006289
Dere12g0560 387 PRINTS DNA repair protein Rad23 signature 369 384 IPR004806 GO:0006289
Dere12g0560 387 SUPERFAMILY UBA-like 161 212 IPR009060 GO:0005515
Dere12g0560 387 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 162 205 IPR015940 -
Dere12g0560 387 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Dere12g0560 387 Gene3D - 157 207 - -
Dere12g0560 387 Gene3D - 252 318 IPR036353 GO:0003684|GO:0006289|GO:0043161
Dere12g0560 387 SMART ubq_7 1 75 IPR000626 GO:0005515
Dere12g0560 387 Pfam XPC-binding domain 262 317 IPR015360 GO:0003684|GO:0006289|GO:0043161
Dere12g0560 387 SMART CBM 260 303 IPR006636 -
Dere12g0560 387 Pfam UBA/TS-N domain 164 202 IPR015940 -
Dere12g0560 387 Pfam UBA/TS-N domain 343 378 IPR015940 -
Dere12g0560 387 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 341 381 IPR015940 -
Dere12g0560 387 SUPERFAMILY UBA-like 322 384 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0560 Dere-ChrDere12 9649343 9657619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0560 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 39.189 4.76e-06 44.7