Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0548 ATGGCTATGGCTGGCTCCAGCCATTCCATCCCTGAAATTCACAGAAATGATTCACACCGTCCTTCAGGTACAAAACCTTCGTCTTTGAAATGGAATTACGATGCATATGGAATAGCGATCGATGATCATGGATCTAGTAGTCCTTACTACAGAGGCCTCACCGATCAATCCCTTGCCATCTACGAGCATGCTTCGTGCCCTGCTTTTCCTCAGACTCAGACTCAGACTCACACTCTGCTTTATTATCTGGTTTCGACATCTTCGGGGGGGTCTAGTCCATACTATAAAGGTCTAACCGACAATTCTCTTGCTCTTTATGGTGGACTTCGAACTGATCCTCCTAGTGCTTTCCATAATTGTGTCTCAGCAAAGAACTTGAGTTTCTGGTTGAAGAGAAAGGACGTGATTGTAAAGAAATTGAATGTTCTGGGACAGAGTTCTTCATCATCATCGGGACCGAAGAGTAGTAAGATTATGACTGAATGTGATGGGAAAGAAGCGAAGAGGAAGGAGGTTACTGAAGAGAAGGCAGTAACGACGAGATTATCGGAAAAATCTAGCAAGGTTGACGCCAAAGTGTTCGAAGAAATTACTGGGAAGGAAAAGGTTAGTGAGGAGTATGGTTTGGTGGGTAAGAAGGAGAAATGCTCGAGAGAGATTACAAGTGTTACTGAAAAGAGAGATGTACCACAGTCATTATGCAATGATGGAAGAGAAATTAATCAGGAGATCATGTTGAAGGTTATAGTCGAGAAGGAGAAAGAAGAAGAGTATGTATGGGCAGACAAGTACCAGCCCAAGGCCTTGGAAGACTTCATCTGCAATAGAGAGAAAGCAATTCAGCTGCAAGCGTTGGTACGGCATGGATGCGGGTGTAATCATCTTATATTTGAAGGACCACCAGGCGTAGGAAAGAGATCCATGATACGGGCTATGCTTCGAGAGGTTTTTGGCCCACTGGAGGGGGAAACGCTTGGTAGCATTCAAGTGCCCATAAGGAAATCACCCCATCATGTTGAGGTGAATCTCTCAGACACAAAAGAATATGAGAAGTATGTAATTGCTGATCTTTTCAAAGAAACTTATGACAGAATCATAAACAAATCACTTCCTTGTAGCCCGGATAACTGCCAAGCAATCATTATATATGAGGCAGAGAGGCTGCCAAAAGAATCCTTATTTTACATTAAGTGGCTGATGGAAAGGTATAAGGAGGGTTGTAGTAAGATCTTCTTTTGCTGCTCCAATGACTCAAAGCTTCAACTTGTCAAAGCACTTTGCGCCACTGTTCAGCTTTCTCCTCCTTCAAGCAAAGAGATTGTGGAGATTTTGGAATTGATAGCCGAACGGGAAGGAATAAAACTGTCCACCAACTTTGCAGCCAAGATAGTTGAGAACTCAAATTACAATCTCCGCCAAGCTATTCGTTCACTTGAGGCCACTTACCGAAACAAGCTTGCCCTCGAAGCAGATCAGGCAATATGTACTGGATGGGAAGAAGTTATTATAAATATTGCTAAAAATATCATTGAGGAGCAAAGTTTGAATCAGTTATTCATCATTCGTAGAACGCTTCAAAGTCTCATGATGCATAATGTTCCCCCAGACTTTGTTTACAAGAAAGTTGATGAAATCAAATCGGAAAGTGTAATGCAATTTGGTGAAGCTGAAGAGAAAGTAGGTGAATTGAAGAATAAGGAATTAACAAAGAAGAATATTGCTCGTAGTTACCAAAAAGTTGAAGAGTTTATAGCGATATTCATGAGCTGGTACAAGAAATCACCTGGAAAAAGTACTGAGCATGTGCAACTTGAGACAAGCATGGAAGTCACTTCGTGA 1839 0.4182 MAMAGSSHSIPEIHRNDSHRPSGTKPSSLKWNYDAYGIAIDDHGSSSPYYRGLTDQSLAIYEHASCPAFPQTQTQTHTLLYYLVSTSSGGSSPYYKGLTDNSLALYGGLRTDPPSAFHNCVSAKNLSFWLKRKDVIVKKLNVLGQSSSSSSGPKSSKIMTECDGKEAKRKEVTEEKAVTTRLSEKSSKVDAKVFEEITGKEKVSEEYGLVGKKEKCSREITSVTEKRDVPQSLCNDGREINQEIMLKVIVEKEKEEEYVWADKYQPKALEDFICNREKAIQLQALVRHGCGCNHLIFEGPPGVGKRSMIRAMLREVFGPLEGETLGSIQVPIRKSPHHVEVNLSDTKEYEKYVIADLFKETYDRIINKSLPCSPDNCQAIIIYEAERLPKESLFYIKWLMERYKEGCSKIFFCCSNDSKLQLVKALCATVQLSPPSSKEIVEILELIAEREGIKLSTNFAAKIVENSNYNLRQAIRSLEATYRNKLALEADQAICTGWEEVIINIAKNIIEEQSLNQLFIIRRTLQSLMMHNVPPDFVYKKVDEIKSESVMQFGEAEEKVGELKNKELTKKNIARSYQKVEEFIAIFMSWYKKSPGKSTEHVQLETSMEVTS 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0548 612 MobiDBLite consensus disorder prediction 1 26 - -
Dere12g0548 612 Gene3D - 436 496 - -
Dere12g0548 612 SUPERFAMILY post-AAA+ oligomerization domain-like 497 542 IPR008921 GO:0003677|GO:0006260
Dere12g0548 612 MobiDBLite consensus disorder prediction 145 175 - -
Dere12g0548 612 FunFam replication factor C subunit 3 436 494 - -
Dere12g0548 612 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 260 567 - -
Dere12g0548 612 Gene3D - 497 591 - -
Dere12g0548 612 Gene3D - 258 435 IPR027417 -
Dere12g0548 612 MobiDBLite consensus disorder prediction 159 175 - -
Dere12g0548 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 483 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0548 Dere-ChrDere12 9314046 9323482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0548 259 592 Core DNA Replication Machinery Family AT5G27740 29.722 3.05e-46 165