Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0544 ATGCTGCTTGGGCAAGCTCCTCCTGCTAATTTCATATCCAAACCCAGTCGCTTGGAATTGCAATTTCAAAGCCACGCCCGTCTCTTCTTGGCTCAGACTTGTTTCTGTGACACCCAATGTACGAAAAAGCTGCCCAGAAGTGTTGGAAATGCGGTTCTCGTTAGAGCTGGGTTTTCTCCTTCACCCAAGGACGTTCTGTCTTGGAATCCTAGCACGGCCGACGATGTTTCGAACTCGAATTTGGAGAATTTATCAGATATAAGCATTGTAACTGGAGGTGTTGACTGTGATCCAGTTGTTACTAATAGCGATCCTATAGTAGAATCTAGGGGTAGGGTATCTGGAAGTTTTGGCAGACTAAAAGCACAGAAAGTGAAGGCTCTCATCCACAGAACTTCTCGCATGAAACAGGAAAGAAGCAGTAATGATGATAACCTAATTGTAGAACATGCAACATCAGAAATAAATGATGATTTTGAACAATCGGAAAGCACTCTAAGTCTTGGATCAAATTCACATATAGGGAATCAGAATACGGCCAATAAATCTCAAAACTCTGACAACAGAATAGATAGTTCAGGCATATCAGTTGCAAGACATTCTGACTCTCATTTGAAAGGATGGGATAATGGAGGATCTATCCGCACTTTGCAGTCTAAATCACAAAAACGACTGAAAGAACAGAGAAAACCAATGGCTGACACAGACTTTTTCAGTCGAGAGTCCTTTAAAGATCTAGGGTACAGTGAATATATGATTGAATCTCTGGCAAAGCAGTTTTTTCTCCGGCCTTCACATATACAGGCCATGGCATTTGAACCAGTATTAAGTGGAAAGACCTGTGTCATAGCTGATCAAAGTGGTTCTGGAAAGACATTAGCATATCTTGCACCAGTAATCCAGAATCTCAGACAAGAAGAATTGGAAGGACGTAGTAAATTCTCTTCACAAGCTCCTCGAGTGGTTATATTGGCACCGACAGCTGAGTTAGCTTCCCAGGTCTTAGATAATTGCCGATCAATGTCAAAATCTGGCATGCCATTCAAATCAATGGTTGTTACAGGTGGCTTTCGACAGAGAACTCAACTGGAGAATTTACAGCAGGGTGTTGATGTTTTAATAGCAACACCTGGCCGTTTTATGTTCCTTATCAAGGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATACTTTTTGGTGATGAGGACTTTGAAGCGGCACTTCGATGCTTGATTAATTCTTCACCTGTTGCCTCACAATATTTATTTGTGACTGCAACTTTACCAAAAGATATTTACAACAAACTAGTTGAAGTTTTTCCTGACTGTGAAGTGATCATGGGACCTGGTATGCACCGGATAAGCCCTCGACTTGAGGAGGTTCTAGTTGATTGCAGTGGAGCAGATGAACAAGAAAAATCTCCTGATACAGCATTTCTAAATAAGAAATTTGCTCTTCTGCAGCTTGCAGAGGGAAGTCCTGTCCATAAAACCATTGTGTTCTGCAACAAAATTGAAACATGCAGAAAAGTTGAGAATGTATTGAAGCGTTTTGATAGAAAGGAGACACGTATACAAGTTCTACCTTTCCACGCTGCCATGACACAAGAATTACGGCTTGCTAATATGGAAAAGTTTATACATTCTCCATCGAAGGAACTTTGTCAGTTTTTGGTTTGCACCGACAGAGCATCACGGGGAATTGACTTTACTGGAGTGGATCATGTTATACTTTTTGACTTCCCACGCGATCCAAGTGAATATGTACGTCGTGTTGGAAGAACTGCCAGAGGCGCTGCTGGAAAGGGTAAGGCATTTATCTTTGTGGTTGGCAAGCAAGTATCCCTTGCACGTAAAATCATGGAAAGAAATCGGAAGGGCCATCCACTACACGATGTGCCTTCTGCCTATGAGCTGATGAAGTAG 1947 0.4181 MLLGQAPPANFISKPSRLELQFQSHARLFLAQTCFCDTQCTKKLPRSVGNAVLVRAGFSPSPKDVLSWNPSTADDVSNSNLENLSDISIVTGGVDCDPVVTNSDPIVESRGRVSGSFGRLKAQKVKALIHRTSRMKQERSSNDDNLIVEHATSEINDDFEQSESTLSLGSNSHIGNQNTANKSQNSDNRIDSSGISVARHSDSHLKGWDNGGSIRTLQSKSQKRLKEQRKPMADTDFFSRESFKDLGYSEYMIESLAKQFFLRPSHIQAMAFEPVLSGKTCVIADQSGSGKTLAYLAPVIQNLRQEELEGRSKFSSQAPRVVILAPTAELASQVLDNCRSMSKSGMPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFMFLIKEGFLQLTNLRCAVLDEVDILFGDEDFEAALRCLINSSPVASQYLFVTATLPKDIYNKLVEVFPDCEVIMGPGMHRISPRLEEVLVDCSGADEQEKSPDTAFLNKKFALLQLAEGSPVHKTIVFCNKIETCRKVENVLKRFDRKETRIQVLPFHAAMTQELRLANMEKFIHSPSKELCQFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYVRRVGRTARGAAGKGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAYELMK 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0544 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 617 IPR027417 -
Dere12g0544 648 MobiDBLite consensus disorder prediction 158 199 - -
Dere12g0544 648 Gene3D - 209 453 IPR027417 -
Dere12g0544 648 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 492 648 IPR001650 -
Dere12g0544 648 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 241 269 IPR014014 GO:0003724
Dere12g0544 648 Gene3D - 478 645 IPR027417 -
Dere12g0544 648 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 272 453 IPR014001 -
Dere12g0544 648 Pfam DEAD/DEAH box helicase 266 439 IPR011545 GO:0003676|GO:0005524
Dere12g0544 648 Pfam Helicase conserved C-terminal domain 493 605 IPR001650 -
Dere12g0544 648 SMART ultradead3 260 468 IPR014001 -
Dere12g0544 648 SMART helicmild6 516 606 IPR001650 -
Dere12g0544 648 CDD DEADc 252 441 - -
Dere12g0544 648 MobiDBLite consensus disorder prediction 154 233 - -
Dere12g0544 648 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 143 645 - -
Dere12g0544 648 CDD SF2_C_DEAD 488 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0544 Dere-ChrDere12 9281587 9289495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0544 242 627 Eukaryotic Initiation Factors Gene Family AT3G19760 27.720 1.67e-28 116