Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0539 ATGTTGCCTCTGCCGCTGCGTTGCTCGCTCTTAACTCTTCCGGGAGCAGATCGGGGCTCAATGGCATACGTTAAGGCTCAAAAGACGAAGGCCTACTTCAAGAGGTATCAAGTTAAATTCAAGAGAAGAAGAGAGGGTAAAACTGATTACCGTGCCAGGATTCGGTTGATTAATCAAGATAAGAACAAGTATAACACCCCAAAATACCGATTTGTGGTTCGATTTACGAACAAGGATATTATTGCCCAAATAACATCTGCTAGCATTGCTGGTGATATTGTTCTTGCTGCTGCCTATGCACATGAACTGCCACAATTTGGTCTTGAAGTGGGCCTCACAAACTATGCAGCAGCGTACTGCACTGGACTTCTTTTGGCTCGTCGGGTCCTTAAAATGCTTGAAATGGATAATGAGTATGAGGGGAATGTAGAGGCTACTGGAGAGGATTTTTCAGTTGAACCTGCTGATACCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAAGACAACAACTGGCAATCGTGTATTTGGTGCCCTCAAGGGAGCATTGGATGGGGGTTTAGATATTCCTCACAGTGATAAAAGGTTTGCTGGTTTCAGTAAGGATAAGAAGGAGCTAGATGCTGACGTTCACCGCAAATATATCTTTGGTGGCCATGTTGCTGCCTATATGAAGACTTTGATGGAAGATGAACCAGAAAAATACCAGTCACATTTCAGTGAATATATCAAGCGAGGATTAGAGCCTGATGGACTTGAGGACATGTACAAAAGGGTTCATGCTGCCATTCGTGCAGATCCCACAGTGAAGAAATCGGAGAAGGAGCCACCAAAGGAACACAAGAGGTACAACTTGAAGAAGCTTACCTATGAAGAGAGGAAGGCTAAGTTGATTGCACGATTACAGGCTCTCAACTCAGCAGCAGCTGATGATGAGGATGACGATGAGTGA 960 0.4469 MLPLPLRCSLLTLPGADRGSMAYVKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDIVLAAAYAHELPQFGLEVGLTNYAAAYCTGLLLARRVLKMLEMDNEYEGNVEATGEDFSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFSKDKKELDADVHRKYIFGGHVAAYMKTLMEDEPEKYQSHFSEYIKRGLEPDGLEDMYKRVHAAIRADPTVKKSEKEPPKEHKRYNLKKLTYEERKAKLIARLQALNSAAADDEDDDE 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0539 319 Pfam Ribosomal L18 C-terminal region 255 308 IPR025607 -
Dere12g0539 319 Coils Coil 290 310 - -
Dere12g0539 319 Gene3D - 21 311 - -
Dere12g0539 319 SUPERFAMILY Translational machinery components 31 272 - -
Dere12g0539 319 CDD Ribosomal_L18_L5e 61 190 - -
Dere12g0539 319 FunFam 60S ribosomal protein L5 21 311 - -
Dere12g0539 319 PANTHER RIBOSOMAL PROTEIN L5-RELATED 21 311 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere12g0539 319 Hamap 50S ribosomal protein L18 [rplR]. 34 266 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere12g0539 319 MobiDBLite consensus disorder prediction 270 289 - -
Dere12g0539 319 PRINTS Ribosomal protein L5 signature 104 124 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere12g0539 319 PRINTS Ribosomal protein L5 signature 63 82 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere12g0539 319 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere12g0539 319 PRINTS Ribosomal protein L5 signature 40 59 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere12g0539 319 PRINTS Ribosomal protein L5 signature 184 203 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere12g0539 319 PRINTS Ribosomal protein L5 signature 226 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere12g0539 319 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 34 195 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0539 Dere-ChrDere12 9193353 9196565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0539 21 312 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 81.507 0.0 504