Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0535 ATGTTAATGCAGAGTTCTCTTCCTAGTTCAATTGAAGCTGGTCTATTTCATGTATCTAATAATGGCAAAGAAGATGTTCTGTGTGACTGGATGCCTAGTGCTGAAACTTGGCAGGTGTGCCTGAAATGTGATAAATACCCTCTTGACTGCTGCAAAGAAGCTGAAGCAATGCAAGAGGGTAGAAGAAATGCTGATTATCCTTGCAGCTCAAATTGTCTAAGAAGTAGCTTAGGTCGGCCATCAACTGCCAGTACAATGACTGACAACACTGTGCCTAATATAGTATACAGGAGAAAGAAGCTACGGAAGAAATCAACTGCACCCCTTTTAAAAATAGGACCTATGACTGTCCGGCCAAGTGCTGATTGCCCTTCAGTCATAAGGTCCTGTGCTCATATATCCGAATCTGAGTATCAGCCTGCTGGGTCTCAAGTTAAGCATGAAATTGAAATGGTTAAAGACTCTGTTGTGCCTGTTGTCGTATGTGAAAGAGCAATAGAAAATAGCATGCATAAAAATTTAGGTATTGAAAGTATTAATGATAGTTGCTCCTCATCAAAATCAAATATGGAAATTACTTCAGATTCCATTGAAACTGAAATGGATGAAACTGGTGAATGCTCCTCCTCTAGTGTAGTAGTTATGGATGTTGTGAGGGAAGACCTATCGGCAAAGGATTTCTGCATCAGAATCTTAAGAAGCCATGGACTTCTTATAGCAGACTCTCATGCTGACATTACAGCTTCTGGGGGAGAGGCTGCTACCCCTGGTAATAGTTGCTCTTCGAGGTCATGCAAAATATGTGGTCGTTTAGATGGTTCATTGAATGTGCTCATATGTGATAATTGTGAAGAGGCATATCATCCATCTTGCTGCATTCCACGTCTGAAAAAATTACCGGTTGATGAGTGGTTTTGTCATTCTTGTCTAAAAAGGAAGCAAAAAGTTCTTAAGGAGACGATTATTAGAAGTTCACCACTCATCAACAGTGAAATGGACATATGTAGAACTGCCTCAGTTAATGGTGGATTGAATCCCATACTGTTAATGTTGAATGACTCTGAGCCAAATAGAACTGGTGTACGGGTTGGTAAAGGTTTTCAAGCAGAAGTTCCTGAATGGTCAGGTCCAATTAGAAGTGACAATGATGACATTGCTGAGCCGTTGGAAATTGATCCTTCAAAATTTTCCAGTTTGCTGGAGGTGAATCACAAAAGGCCAACTAGACTCAGCTCCATTGGTAATTGGCTTCAGTGTCAGGAGGTTGTAGATAGAGCCAATGGAACTATATGTGGAAAATGGCGCAGGGCTCCACTTTTTGAGGTCCAAACTGATGACTGGGAGTGCTTCTGTGCCATCCATTGGGATCCAGCTCATGCTGATTGTGCTGTACCGCAGGAGTTGGAAACAGATCAAGTTCTGAAGCAACTAAAGTATATAGAAATGCTGAGACCGCGACTTGCAGCTAAACGGCAGAAATCTGATTGCACAAAGGGTAGTGAATGA 1506 0.4163 MLMQSSLPSSIEAGLFHVSNNGKEDVLCDWMPSAETWQVCLKCDKYPLDCCKEAEAMQEGRRNADYPCSSNCLRSSLGRPSTASTMTDNTVPNIVYRRKKLRKKSTAPLLKIGPMTVRPSADCPSVIRSCAHISESEYQPAGSQVKHEIEMVKDSVVPVVVCERAIENSMHKNLGIESINDSCSSSKSNMEITSDSIETEMDETGECSSSSVVVMDVVREDLSAKDFCIRILRSHGLLIADSHADITASGGEAATPGNSCSSRSCKICGRLDGSLNVLICDNCEEAYHPSCCIPRLKKLPVDEWFCHSCLKRKQKVLKETIIRSSPLINSEMDICRTASVNGGLNPILLMLNDSEPNRTGVRVGKGFQAEVPEWSGPIRSDNDDIAEPLEIDPSKFSSLLEVNHKRPTRLSSIGNWLQCQEVVDRANGTICGKWRRAPLFEVQTDDWECFCAIHWDPAHADCAVPQELETDQVLKQLKYIEMLRPRLAAKRQKSDCTKGSE 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0535 501 FunFam uncharacterized protein LOC106759733 isoform X4 414 479 - -
Dere12g0535 501 ProSiteProfiles Zinc finger PHD-type profile. 262 312 IPR019787 -
Dere12g0535 501 SMART PHD_3 264 310 IPR001965 -
Dere12g0535 501 Pfam PHD-finger 265 310 IPR019787 -
Dere12g0535 501 ProSiteProfiles Zinc finger CW-type profile. 410 470 IPR011124 GO:0008270
Dere12g0535 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 329 IPR013083 -
Dere12g0535 501 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 258 319 IPR047171 GO:0006338
Dere12g0535 501 SUPERFAMILY FYVE/PHD zinc finger 261 316 IPR011011 -
Dere12g0535 501 Gene3D - 414 479 - -
Dere12g0535 501 Pfam ELM2 domain 361 474 IPR000949 -
Dere12g0535 501 ProSitePatterns Zinc finger PHD-type signature. 265 309 IPR019786 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0535 265 314 C2H2 Transcription Factor Family AT3G01460 40.000 3.02e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere12g0535 ELM2 1.4e-05 No_clan