Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0527 ATGACAGAAGACGACGAGCTGCGTCTGACCGTGTACGGTTTGCTTCCCGAAGGACCGAATTTCACCGACCGAATCCCTGAAGATGCGCTTCACAAGCAGAAGCACAAATTTCGTGCTCTTCCACTACAAAAGGGACCGAGAGCTGAACGGAAGACGAGAGGTTTGGAAGTGAACGAAAGAGAAAATAGGAAGAAATCGAATCCAGAAGTGTGGGCGAGTGTTGTTGGAGAAATTGCTGCGTATGGTTGTGAATCTGTACAAAGTTCTCTGAGATTTCCTAATGTTATACCAAAGAGAGTAACACTTATTAGCGCTTCTTCAAAAACATATTGGGTGGTTGAAATTGAGGAAGATGATAGCAAAGAACTGTGTTTCAAAACGGGTTGGAAGAAATTTGCAGAAGACAATGGTTTGGAAAGTGGGGAGTTTATAGTTTTCAAATATGATGGGAATTCAACGTTCAAGGTTAAGATCTATGGAAAATCTGCCTGCGAGAAGGAGCCTCAAAGTCTGATGGGTAACTATCAGAATTACTCTGATGCTGCTGATGATGCTGGCATGCAAGATCAGAAAGAGACAAGAACGAGAATTCGTCAACAAAATCAGAAAGAAAAACATCCAATTGATGAAAATGGACGAACTAGGTGGAAGCGAGATGATGAGATAAAGCAAGAGAAAGCAGATTCTGATGATTATGGTAATATTAACCAGGAAAGAAGGCAATCTGTGAAAGAAGCTGAAGAAGAAAGCAATGATGTTCATATCAGGAAAACTGGAGAAGGCAAGTATGAGAGGCCAATGCAAAAAGCGTTCAGTAAAGGCAGGAAAGTGGACTCCAAGAATCCTTCATTCAGGGTTCTTCTGAAGCAAGTCTCCGCAGAGAAGGGCACTCTGTGCATCCCAACAGAGTTCCTCAAACACCATATGACAATCAAGAGACAAAAAGTAGAGCTTGAGACATCAAAAGGGGTATGGACTGTGACATTACTTCCCCACACAAAAAGAAACAGTATATATGCCAGATTAAGTGCCGGCTGGACAGATTTCGCAAGAGATAACCATTTAAAGGCCGGAGAAACTCTCGTTTTTACGATGATTCAGAGAAGTGATTGTCCTAAGTTCATAGTTTATAAACTCAGGAAATAG 1146 0.4171 MTEDDELRLTVYGLLPEGPNFTDRIPEDALHKQKHKFRALPLQKGPRAERKTRGLEVNERENRKKSNPEVWASVVGEIAAYGCESVQSSLRFPNVIPKRVTLISASSKTYWVVEIEEDDSKELCFKTGWKKFAEDNGLESGEFIVFKYDGNSTFKVKIYGKSACEKEPQSLMGNYQNYSDAADDAGMQDQKETRTRIRQQNQKEKHPIDENGRTRWKRDDEIKQEKADSDDYGNINQERRQSVKEAEEESNDVHIRKTGEGKYERPMQKAFSKGRKVDSKNPSFRVLLKQVSAEKGTLCIPTEFLKHHMTIKRQKVELETSKGVWTVTLLPHTKRNSIYARLSAGWTDFARDNHLKAGETLVFTMIQRSDCPKFIVYKLRK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0527 381 MobiDBLite consensus disorder prediction 174 252 - -
Dere12g0527 381 SUPERFAMILY DNA-binding pseudobarrel domain 94 168 IPR015300 -
Dere12g0527 381 Gene3D - 263 381 IPR015300 -
Dere12g0527 381 ProSiteProfiles B3 DNA-binding domain profile. 283 381 IPR003340 GO:0003677
Dere12g0527 381 ProSiteProfiles B3 DNA-binding domain profile. 97 162 IPR003340 GO:0003677
Dere12g0527 381 CDD B3_DNA 284 378 IPR003340 GO:0003677
Dere12g0527 381 CDD B3_DNA 92 159 IPR003340 GO:0003677
Dere12g0527 381 SMART B3_2 83 162 IPR003340 GO:0003677
Dere12g0527 381 SMART B3_2 284 380 IPR003340 GO:0003677
Dere12g0527 381 Gene3D - 86 164 IPR015300 -
Dere12g0527 381 SUPERFAMILY DNA-binding pseudobarrel domain 278 375 IPR015300 -
Dere12g0527 381 PANTHER B3 DOMAIN-CONTAINING 96 254 - -
Dere12g0527 381 MobiDBLite consensus disorder prediction 185 252 - -
Dere12g0527 381 Pfam B3 DNA binding domain 98 160 IPR003340 GO:0003677
Dere12g0527 381 Pfam B3 DNA binding domain 287 377 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0527 Dere-ChrDere12 8894584 8900521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0527 239 363 REM Transcription Factor Family AT4G33280 27.778 8.63e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere12g0527 B3 4.4e-13 CL0405