Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0522 ATGGTTCTGAGAAGCCGAATTTTCAGTGCTCATATTGTTATTAGTAGCATCTCGCTACTGCTTGCTTGTAGCATGACCTATGCGACTGAGACTGATATCTTTTGCTTGAGAAGTATAAAAGACTCACTTGAAGACCCTTATAATTATTTGCAGTCTTCCTGGAATTTCAATAACAACACAGAAGGGTTTATCTGTCATTTCACTGGGGTTGAATGTTGGCACGATGAGGAGAACAGAGTTTTGAATCTCAAGTTGTCAAATATGGGACTCAAGGGCCGATTCCCTCGTGCCTTACAAAATTGCTCAAGCTTAACCGGATTGGATCTTTCAATCAACAATCTTTCTGGAACCATTCCAGCAGATATCTCTAATCTTCTTAAATTTGTGACAGTCCTTGACCTTTCTTCAAATGACTTCTCAGGGGAGATCCCTGTGGGCCTTGTGAATTGTTCCTATCTTAATACCCTTAAACTTGACCAAAATCAATTAACTGGTCATATTCCTCCACAACTCGGTCAGCTCTCACGGATTAAGTCATTTACTGTCACCAATAATCTTTTGACGGGGCAAGTTCCATCATTTGGAAGTGCTGATATTACAGCAGATAGTTATTCAAATAATCCAGGGCTTTGTGGTGGTCCCTTGGAGCCTTGCCAGGGGAAGTCTACCAAGACTAATACTGCAGTTATAGCTGGTGCAGCTGTTGGTGGGGTAACTGTTGCAGCATTAGGATTGAGTATTGCTGCATTCTTCTTTGTGCGCCGAGTTTCTGTGAAGACAGAAGAGGACCCTGAAGAAAATAAATGGGCAAGAAGTCTGAAGGGAACTAAAGGAATAAAGGTTTCTATGTTTGAGAAGTCGGTTGCAAAAATGAAATTGAGTGATCTCATGGAGGCTACTAACAACTTCAGTAAAAGCAATATTATCGGTTCAGGAAGAACAGGAACTATGTACAAAGCTGTCCTTGACGATGGTAGCACAATACTCACGGTTAAAAGGTTGCAGGAATCTCAATACTCAGAGAAGGAATTTACATCTGAGATGGCTACGTTGGGGACTGTCAGACATCGTAACTTGGTTTCTCTTTTAGGGTTTTGCGTGGCTGATAAGGAGAGGCTTTTGCTCTATAAAAATATGGCAAATGGAACCCTTCATGATCAGCTACATCCTGCAACTGGGGGGAGCACCATGGAGTGGCCTTTAAGGCTAAAAGTTGCAGTTGGGGCAGCCAAAGGATTAGCATGGCTTCACCACAGCTGCAATCCCCGTATTATCCACCGAAACATAAGCTCTAAGTGCATCTTGTTGGATGAAGATTTTGAGCCCAAAATTTCTGATTTTGGCCTCGCTAGATTGATGAATCCAATTGATACACATTTGAGTACTTTTGTAAATGGGGAGTTTGGGGATCTAGGTTATGTTGCTCCTGAGTATACTAGAACTTTGGTGGCTACACCTAAGGGAGATGTTTATAGCTTTGGGACTGTGCTTCTTGAGTTGGTGACTGGTGAAAGACCTACCCATGTGGCTAAATCTCCTGAAACCTTCAAAGGAAATTTGGTGGAATGGATTTCACAGCTCTCAAGCAAATCTGAACTCCAGGATGCTATTGATCAATCACTAATTGGGAAGGGTGTTGATAGTGAAATTTTCCAATTTCTTAAGGTTGCATGCAACTGTGTGGTACCAAATCCAAAAGAGCGGCCCACTATGTTTGAAGTGTACCAACTTCTAAGAGCAATTGGGGCTAGATACAATTTTACGGCTGATGATGAGATATTGATACCTGCAGATACCGGCGATGCTGCTGATTTAGAGGAACTTATTGTAGCTCGAGAAGAAAATGATTGA 1851 0.4192 MVLRSRIFSAHIVISSISLLLACSMTYATETDIFCLRSIKDSLEDPYNYLQSSWNFNNNTEGFICHFTGVECWHDEENRVLNLKLSNMGLKGRFPRALQNCSSLTGLDLSINNLSGTIPADISNLLKFVTVLDLSSNDFSGEIPVGLVNCSYLNTLKLDQNQLTGHIPPQLGQLSRIKSFTVTNNLLTGQVPSFGSADITADSYSNNPGLCGGPLEPCQGKSTKTNTAVIAGAAVGGVTVAALGLSIAAFFFVRRVSVKTEEDPEENKWARSLKGTKGIKVSMFEKSVAKMKLSDLMEATNNFSKSNIIGSGRTGTMYKAVLDDGSTILTVKRLQESQYSEKEFTSEMATLGTVRHRNLVSLLGFCVADKERLLLYKNMANGTLHDQLHPATGGSTMEWPLRLKVAVGAAKGLAWLHHSCNPRIIHRNISSKCILLDEDFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGTVLLELVTGERPTHVAKSPETFKGNLVEWISQLSSKSELQDAIDQSLIGKGVDSEIFQFLKVACNCVVPNPKERPTMFEVYQLLRAIGARYNFTADDEILIPADTGDAADLEELIVAREEND 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0522 616 SUPERFAMILY L domain-like 29 194 - -
Dere12g0522 616 Gene3D Ribonuclease Inhibitor 30 220 IPR032675 -
Dere12g0522 616 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Dere12g0522 616 Pfam Protein kinase domain 304 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0522 616 CDD STKc_IRAK 309 578 - -
Dere12g0522 616 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 379 598 - -
Dere12g0522 616 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 264 378 - -
Dere12g0522 616 FunFam Nuclear pore complex protein NUP107 29 193 - -
Dere12g0522 616 ProSiteProfiles Protein kinase domain profile. 303 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0522 616 Pfam Leucine rich repeat N-terminal domain 31 73 IPR013210 -
Dere12g0522 616 Gene3D Transferase(Phosphotransferase) domain 1 379 594 - -
Dere12g0522 616 SUPERFAMILY Protein kinase-like (PK-like) 281 578 IPR011009 -
Dere12g0522 616 Gene3D Phosphorylase Kinase; domain 1 264 377 - -
Dere12g0522 616 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 48 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0522 Dere-ChrDere12 8798987 8801319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0522 17 592 Receptor kinase-like Gene Family AT3G28450 47.692 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Dere12g0522 Pkinase 4.1e-38 CL0016