Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0501 ATGGGTAGGCTATTATTCTTCTCAAGTCTCAGTATTCTATTCCTTTGTGTTCTTCCAACAGCCACATCAAGAAGATCATCTTCAAGATCAAGAAGACCTTCTTCCTCTAGCAACATTGAATGGTGGTGCAACCAAACCCCACACCCAGGTCCATGCAGATACTTCATGAGCCATACGCACCACCATGGCTTCGGACCCAAGCACAAGTCGAAGTTCCGAGGCATGCTGGTTCAGATAGCCTTGGAACAAGCTCAACACATGCAATACGAAACTCGAGCCTATGCAGAAAAAAGCGTCACCAAGAAGCAAAAAGCTGTGACCAGTGATTGCTTGAAGCTCTACGACAACACCATCTTCCAGTTGAACCGAACCATCCTAGGGCTCACAGCCAGGTCGAAACGACGTCGTTGCTCCGTCCTCGACGCCCAAACTTGGCTCAGCACAGCCCTCACCAACATGCAGACCTGCAAGAATGGAGCTTCAGACTTAAGGGTTAATATGTCTCACTTTATAGCGTCCAGTAACATGTGCTTCAATGTCTCCAAGATGATAAGCAATAGCTTAGCGATAAACGCTGCGTTTTTGAAAAGACCCAAGATAGATTATCACAAGGATAAAAATGGGACGTCGGAGGAGTCTGAATTTCCGAGCTGGTTTACGAGACGTGAGAGGAGGCTAGTGACGACGTCGACGGCGGCGATAAAGGCGAATCTCGTGGTGGCGAAGGATGGCTCAGGGCACTTCAAGACGGTGCAGGCTGCCTTAAACGCGGCGGCGAAGAGAAGCAGAAAGACTAGGTTTGTGATAAGAGTGAAGAAAGGGATTTACAGAGAGAACATCGAGGTGGATAAGAACAACGATAATATAATGCTTGTTGGTGATGGCATGAGATACACTGTAATAACGGGTTCGAAGAGCGTTAAAGATGGCATTACCACGTATAGCTCTGCAACTGCAGGTACCATTTTCTGCAGCTTTTAA 981 0.473 MGRLLFFSSLSILFLCVLPTATSRRSSSRSRRPSSSSNIEWWCNQTPHPGPCRYFMSHTHHHGFGPKHKSKFRGMLVQIALEQAQHMQYETRAYAEKSVTKKQKAVTSDCLKLYDNTIFQLNRTILGLTARSKRRRCSVLDAQTWLSTALTNMQTCKNGASDLRVNMSHFIASSNMCFNVSKMISNSLAINAAFLKRPKIDYHKDKNGTSEESEFPSWFTRRERRLVTTSTAAIKANLVVAKDGSGHFKTVQAALNAAAKRSRKTRFVIRVKKGIYRENIEVDKNNDNIMLVGDGMRYTVITGSKSVKDGITTYSSATAGTIFCSF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0501 326 Pfam Pectinesterase 237 320 IPR000070 GO:0030599|GO:0042545
Dere12g0501 326 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 194 IPR035513 -
Dere12g0501 326 CDD PMEI-like_3 41 196 - -
Dere12g0501 326 SUPERFAMILY Pectin lyase-like 231 318 IPR011050 -
Dere12g0501 326 Gene3D - 231 322 IPR012334 -
Dere12g0501 326 Pfam Plant invertase/pectin methylesterase inhibitor 38 190 IPR006501 GO:0004857
Dere12g0501 326 SMART PMEI_2 34 190 IPR006501 GO:0004857
Dere12g0501 326 NCBIfam pectinesterase inhibitor domain 9 191 IPR006501 GO:0004857
Dere12g0501 326 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 194 IPR035513 -
Dere12g0501 326 PANTHER PECTINESTERASE 12 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0501 Dere-ChrDere12 8421083 8422063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0501 35 320 Carbohydrate Esterase AT5G51500 50.519 4.29e-88 272