Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0482 ATGGGGCCAAATGCAGATTCTTTGTCGGCGGTAGCGCAACAAGCGGAGCAACTTAGAATTAACGGCAACAATTACTTCAAGAAAGATCGTTTCGGAGCTGCCATCGATGCTTATACTGAGGCAATTACTCTATGCCCCAATGTTCCGGTTTATTGGACGAATCGTGCTCTGTGCCATCGCAAGCGGAATGACTGGGCGAGAGTCGAGGAAGATTGTCGGAGAGCTATTCAACTTAATAAAAATTCAGTCAAGGCCCACTATATGTTGGGACTTGCATTGCTGCAGAGACAAGAATATGTCAAGGGAATTAGAGAATTGGAGAAGGCTTTGGATCTTGGGAGGGGAGCCAATCCTATGGGCTATATGGTAGAAGAGATCTGGCAGGAGCTTGCTAAAGCAAAATACCAAGAATGGGAACGTTCATCTACCAAGCGATCGTGGGAATTACAGAGCTTGAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAGCATCTTCTTGATGTCTCCCAAGAGGAAGATTTTTCAGATGAAAATCCAATTTCCCATTCAGAACAACTAGAGGCTTTAGGAAGGGTATTCAGTGAAGCTGCAGAGCATGACACACCTACTGAGGTGCCAGATTACCTTTGCTGCAGAATCACACTTGAAATTTTCCGCGACCCTGTCATTACTCCAAGTGGACTTACATATGAGAGGGCAGTGATTCTTGACCATCTTCACAAGGTTGGTAGGTTTGATCCGGTAACACGAGAAGCACTTAATCCATCTCAGCTAATACCAAACTTGGCCATAAAGGAAGCAGTCCAGGCATTCTTGGACAAACATGGATGGGCCTACAAGATGGACTAA 849 0.4511 MGPNADSLSAVAQQAEQLRINGNNYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHRKRNDWARVEEDCRRAIQLNKNSVKAHYMLGLALLQRQEYVKGIRELEKALDLGRGANPMGYMVEEIWQELAKAKYQEWERSSTKRSWELQSLKEACESALKEKHLLDVSQEEDFSDENPISHSEQLEALGRVFSEAAEHDTPTEVPDYLCCRITLEIFRDPVITPSGLTYERAVILDHLHKVGRFDPVTREALNPSQLIPNLAIKEAVQAFLDKHGWAYKMD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0482 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 7 280 IPR045200 GO:0000209|GO:0061630
Dere12g0482 282 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
Dere12g0482 282 SMART tpr_5 49 82 IPR019734 GO:0005515
Dere12g0482 282 SMART tpr_5 15 48 IPR019734 GO:0005515
Dere12g0482 282 SMART tpr_5 83 116 IPR019734 GO:0005515
Dere12g0482 282 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
Dere12g0482 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Dere12g0482 282 Pfam Tetratricopeptide repeat 22 47 IPR019734 GO:0005515
Dere12g0482 282 SUPERFAMILY RING/U-box 197 279 - -
Dere12g0482 282 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Dere12g0482 282 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Dere12g0482 282 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Dere12g0482 282 SUPERFAMILY TPR-like 13 131 IPR011990 GO:0005515
Dere12g0482 282 CDD RING-Ubox_CHIP 205 275 IPR045202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0482 Dere-ChrDere12 8049194 8056786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0482 15 281 U-box Gene Family AT3G07370 70.787 5.36e-147 411