Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0481 ATGGCGAAGCCTGGGGTGGTGGTGGAATCTGATCCAACGGCGGCGGCGAAGGCGTTGGAGTTGAAGAAGGACTTGCAGAGATTGGTGAAGTCTATCGTTGATGATGAGGATTGCAGCACCCAAACCATTGATCAAGCTAGGGAAGCTCTTTGCGCGCTTAAGGACTTGAAACTTCGAAGGAGATCATCGTCATCTCCATCGTCATCGTTGAAGCTTTGCCCGGAAGAATTTAAGTGCCCTCTTTCCAAGGAAATGATGAGAGATCCTGTCATTGTGGCTTCTGGACAGACATATGACAGACCCTTCATTCAAAAATGGCTGAAAGCTGGGAACAGAACTTGCCCTCAAACACAAGAAGCCCTCTCACACACTGTCCTCACTCCAAATCACCTCATAAGGGAAATGATAGCACAATGGTGCAAGAATCATGGGGTAGAATTATCTAACCAATTAGTTCACTATATGTACAATGGGGAAGGCGTAATAACAGATGCAGATCGTGATCATTTTCTTTCTCTGCTTGAGAAAATGTCTTCATCATCACTTTCTGAGCAGAAAGCAGCTGCAAAGCAGCTTCGTTTATTGACAAAGAAAATGCCTTCCTACAGAACGCTCTTTGGTGAGACTTCTCAAGCCATTTCTGAAATTCTCAAACCAATCTCTGCAAGTGACTCCTTCAATAATATTCACCCCGATCTCCAAGAAGATGTGATCACAACGCTTCTGAACATCTCAATCCATGACAGCAACAAGAAGCTTGTAGCAGAAACTCCAATGGTGATTCCACTCCTTGTGAAAGCCTTGAAATCAGGAACTATAGAAACTAGAAGCAATTCTGCAGCCACCCTTTTCACTTTGTCTGCTCTAGACTCAAATAAGGAGCTTATAGGGAAATCTGGTGCCCTAAAGCCATTAATTGACCTCTTAGAAGAAGGGCATCCCTTAGCCATGAAGGATGTTGCTTCAGCAATTTTCACCTTGTGTGTGATTCATGAGAACAAGGCAAGGGCAGTAAGGGATGGTGCAGTGAGTGTGATACAGAGGAAGATTGCAAGCCAGGTTCATGCTGATGAATTGCTCGCAATCCTTGCACTGCTCTCGAGTCACCACAAGGCGGTTCAGGACATGGCAGATCTTGGAGCTGTTCCTAGCTTGCTAAGCATTATGAGGGAGAGCAACTGTGAACGAAACAAGGAGAATTGCATAGCGATTCTTCTAACTATTTGTCTGTATGATAGAACAAAGTTGAAGGAGATAAAGGAAGAGGAGATTACATATAGAACAATCTCTGAGCTTTCATTGAATGGAACTTCAAGGGCTAAGAGGAAGGCTAGTGGAATTCTTGAGAGACTGAATAGAGTTGTTCATATTACACACACTGCATAA 1386 0.4394 MAKPGVVVESDPTAAAKALELKKDLQRLVKSIVDDEDCSTQTIDQAREALCALKDLKLRRRSSSSPSSSLKLCPEEFKCPLSKEMMRDPVIVASGQTYDRPFIQKWLKAGNRTCPQTQEALSHTVLTPNHLIREMIAQWCKNHGVELSNQLVHYMYNGEGVITDADRDHFLSLLEKMSSSSLSEQKAAAKQLRLLTKKMPSYRTLFGETSQAISEILKPISASDSFNNIHPDLQEDVITTLLNISIHDSNKKLVAETPMVIPLLVKALKSGTIETRSNSAATLFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASAIFTLCVIHENKARAVRDGAVSVIQRKIASQVHADELLAILALLSSHHKAVQDMADLGAVPSLLSIMRESNCERNKENCIAILLTICLYDRTKLKEIKEEEITYRTISELSLNGTSRAKRKASGILERLNRVVHITHTA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0481 461 FunFam RING-type E3 ubiquitin transferase 72 146 - -
Dere12g0481 461 SUPERFAMILY RING/U-box 62 147 - -
Dere12g0481 461 CDD RING-Ubox_PUB 74 126 IPR045210 -
Dere12g0481 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 146 IPR013083 -
Dere12g0481 461 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Dere12g0481 461 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Dere12g0481 461 PANTHER U BOX DOMAIN-CONTAINING 16 451 - -
Dere12g0481 461 Pfam U-box domain 74 143 IPR003613 GO:0004842|GO:0016567
Dere12g0481 461 SUPERFAMILY ARM repeat 155 451 IPR016024 -
Dere12g0481 461 Gene3D - 355 455 IPR011989 -
Dere12g0481 461 Gene3D - 170 354 IPR011989 -
Dere12g0481 461 SMART arm_5 369 410 IPR000225 GO:0005515
Dere12g0481 461 SMART arm_5 289 329 IPR000225 GO:0005515
Dere12g0481 461 SMART arm_5 247 288 IPR000225 GO:0005515
Dere12g0481 461 FunFam RING-type E3 ubiquitin transferase 160 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0481 Dere-ChrDere12 8044332 8047483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0481 135 461 U-box Gene Family AT3G07360 60.303 1.65e-134 389