Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0480 ATGGAAAACGATTTCTTTCTTAATGCAGGAATTTCCGCTGCTCTTCATTTCGAGCCTTCTTCATCTTCTTCTCCTTCAATGCCCGCGTGGCAGTCACTCTCATCCGCCATGGATATTCCAGCTTCTTCTGAGCAACCCCAGCAAGATTGCTTCTACAACCCCACATGGGAGAAGACAACCACGGATCATCATCACGCCCTCCAATTCGATTCTGCCCTGAGTTCAATGGTTTCTTCCCCTGCAGCTTCCAATTCCAACTTGTCCAATGACAATTTCGTCATCAGAGAATTGATCGGAAAATTGGGAAACATTGGCAGCACCGGCGAGATCTCTTCTTACATGAATGGAAATAACAGCGCCAACACTTCATGTTATAGCACGCCTTTGAGCTCTCCTCCTAAGTTGAGCATTCCTCCATTGATGAATAATCACTTGGTGAAAGAGAAATTGCCAATGGCTTTGAATTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGGTTTGCGGAGAGAGCTGCCAAGTTTTCTTGCTTTGGAAGTAGGAGCTTCAATGACAGAAGTTCAAGTCAAATTGGGATGAACAGTAATGCTGACTTCGCTCAGAGATCTAGTTCATTAATGGACAATGGGAAGCTTCCTAGAGTCTCAAGCAGCCCATCTCTGAAAGCACTTGTTTCTCAAATTGAAAACAAGAATTCTCCTTTGCATTCCCAAGAGGAATCCACAATCTCTGAGCAAAACCCGAATGGGGAATCTGGGGTGAAACCTTCACCACCTGATATGAATTCCAGAAAGAGAAAAGTTTCTTCCAAGGGAAAACCCAAAGAGACTTCAGCCTCTACCAATCCTCCCAAGGCTGCTGAAGCTAATGAAGATTCAAGTGCAAAGCGCAGCAAGCCAAATCAAGGAGAAGGACATGAAAACGTTCATGTGAAGGCAGAGGAAGATTCAAAAGGAGGTAACAGTAATGCAGGGGATGAGAAACAGAACAAGAGCAACAACTCAAAACCTCCTGAGCCTCCAAAGGACTACATTCATGTCAGAGCAAGACGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGCTTCTGCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGGAAAGCTCTTATGCTTGATGAAATCATAAACTATGTACAATCATTGCAGCGTCAAGTTGAGTTCCTTTCCATGAAATTGGCTTCTGTAAACACCAGGCTTGACTTGAGCATTGACAATCTCATCTCAAAAGATATACTTCAATTGAATAACTCTTTGGCACACCAAGCCATATTCCCTATAGATTCCTCGGCAACAGCCTTTTATGGGCAAAACCCAGCAATCCACAATCACATCCCTAATGGAACTGTGACCCACTGCTCAGTGGAATCTTTAGATACCTCTCTGTGCCAAAGCCTTGGCATGCAATTACCTCCCCTAAATGGCTTTAATGAAGGTGCTTCTCAGTATCCAATGACTTTCTCTGAGGATGACCTCCACACCATTGTTCAGATGGGGTTTGGCCAAACTGAAAATAGGAAAACACCGACACAATCCCCAAGCTTCAATGGTCCAAATCAGTTACCCCATATGAAAGTTGAGCTCTGA 1647 0.4426 MENDFFLNAGISAALHFEPSSSSSPSMPAWQSLSSAMDIPASSEQPQQDCFYNPTWEKTTTDHHHALQFDSALSSMVSSPAASNSNLSNDNFVIRELIGKLGNIGSTGEISSYMNGNNSANTSCYSTPLSSPPKLSIPPLMNNHLVKEKLPMALNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSSSQIGMNSNADFAQRSSSLMDNGKLPRVSSSPSLKALVSQIENKNSPLHSQEESTISEQNPNGESGVKPSPPDMNSRKRKVSSKGKPKETSASTNPPKAAEANEDSSAKRSKPNQGEGHENVHVKAEEDSKGGNSNAGDEKQNKSNNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDLSIDNLISKDILQLNNSLAHQAIFPIDSSATAFYGQNPAIHNHIPNGTVTHCSVESLDTSLCQSLGMQLPPLNGFNEGASQYPMTFSEDDLHTIVQMGFGQTENRKTPTQSPSFNGPNQLPHMKVEL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0480 548 Gene3D - 349 425 IPR036638 GO:0046983
Dere12g0480 548 Coils Coil 399 419 - -
Dere12g0480 548 MobiDBLite consensus disorder prediction 230 252 - -
Dere12g0480 548 MobiDBLite consensus disorder prediction 523 539 - -
Dere12g0480 548 FunFam Basic helix-loop-helix transcription factor 349 421 - -
Dere12g0480 548 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 420 IPR036638 GO:0046983
Dere12g0480 548 MobiDBLite consensus disorder prediction 230 343 - -
Dere12g0480 548 MobiDBLite consensus disorder prediction 273 287 - -
Dere12g0480 548 SMART finulus 358 408 IPR011598 GO:0046983
Dere12g0480 548 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 243 452 IPR024097 GO:0006355
Dere12g0480 548 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 402 IPR011598 GO:0046983
Dere12g0480 548 MobiDBLite consensus disorder prediction 322 336 - -
Dere12g0480 548 MobiDBLite consensus disorder prediction 289 321 - -
Dere12g0480 548 Pfam Helix-loop-helix DNA-binding domain 356 403 IPR011598 GO:0046983
Dere12g0480 548 MobiDBLite consensus disorder prediction 523 548 - -
Dere12g0480 548 CDD bHLH_AtBPE_like 342 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0480 Dere-ChrDere12 8010353 8012930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0480 1 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 47.082 1.74e-112 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere12g0480 HLH 4.3e-06 No_clan