Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0475 ATGGATGAGGATTTCGATATGCCCCCGCCGGAAGAGATGAACGAGGACTTCGATCTTCCCGATGAAAACCCCATTCTCAAGGTTGGAGAGGAGAAGGAGATCGGCAAGCAGGGCTTGAAGAAGAAGCTCCTCAAGGAAGGTGAAGGCTGGGACACCCCTGAAGTGGGCGATGAAGTTGAAGTTCATTACACGGGAACGTTGCTTGATGGGACCAAGTTCGATTCAAGCCGCGACAGGGGGACCCCTTTCAAGTTTACGCTCGGACAAGGGCAAGTAATTAAAGGGTGGGATGAGGGAATAAAAACCATGAAGAAAGGTGAAAATGCCATTTTCACCATCCCTCCTGAGCTAGCATATGGGGAATCTGGTTCCCCTGGAACAATTCCTCCCAATGCTACTCTTCAATTTGATGTTGAGCTGCTGTCTTGGACTAGTGTGAAGGACATAAGCAAGGATGGTGGCATATTTAAGAAGATACTTGTGGAGGGGGAGAAATTTGAGAACCCCAAGGATCCTGATGAAGTTTTAGTTAAATATGAAGCTCGGCTTGAAGATGGAACGCTTGTATCAAAATCTGATGGAGTGGAGTTCACAGTGAGAGAGGGTTATTTTTGTCCGGCGTTGTCCAAAGCTGTTAAAACCATGAAGAAGGGTGAGAAAGTGCTTTTAACTGTAAAGCCGCAATATGGCTTTGGTGAGAAGGGGAAGACTGCACAAGGTGATGAAGGTGCAGTTCCTCCAAATGCTACTTTGCAGATTACTCTTGAGTTAGTATCTTGGAAGACTGTTTCAGAAATAACTGATGATAAGAAGGTCATTAAGAAGATCCTCCAAGCAGGGGAAGGATATGAGCGTCCAAATGAGGGAGCTGTTGTGAATTTGAAATTGATTGGTAAACTGCAAGATGGCACTGTCTTCTTGAAGAAGGGCGATGATGAAGAGTTGTTTCAATTCAAAACAGATGAAGAGCAAGTCATTCATGGGCTTGATAGAGCAGTAATGACTATGAAGAAGGGTGAAGTAGCACTTTTGACTATTGCACCTGAGTATGCCTTTGGTTCATCCGAGTCCAAGCAGGAATTAGCTGTTATTCCGCCAAACTCAACTGTTTATTACGAAGTTGAGCTAGTATCATTCGAGAAGGAGAAGGAGTCATGGGACATGAACACAGAGGAGAAAATTGAAGCTGCTGGTAGGAAGAAAGAAGAAGGAAATGTGTTGTTTAAGAGTGGAAAGTATGCAAGAGCTTCTAAAAGATACGAGAAGGCTGTAAAGTACATAGAGTATGATTCCGCCTTTAGTGAAGAGGAGAAGAAGCAGGCCAAGGCATTGAAGGTAGCTTGCAATTTGAACAATGCGGCTTGCAAGCTGAAGTTAAAAGATTATAAAGAAGCAGAGAAATTGTGTACTAAGGTGCTGGAACTCGAAAGTAGAAACGTGAAGGCACTTTATAGAAGGGCCCAGGCCTATATCCAGCTGGCTGACTTAGATTTGGCTGAATTTGACATTAAGAAAGCTCTGGAGATTGACCCCGACAACAGGGAGGTCAAGCTGGAGTACAAGACTTTGAAGGAAAAGGTGAAGGAGTATAACAAAAAGGAGGCCAAATTTTATGGAAATATGTTTGCCAAGATGAATAAGCCGGAGTCACTCGACAATAGTAAACAAGCGACGAAGGATGCTGAACCTATGAGCATAGATAGCAAGGCATAA 1713 0.439 MDEDFDMPPPEEMNEDFDLPDENPILKVGEEKEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPGTIPPNATLQFDVELLSWTSVKDISKDGGIFKKILVEGEKFENPKDPDEVLVKYEARLEDGTLVSKSDGVEFTVREGYFCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKTAQGDEGAVPPNATLQITLELVSWKTVSEITDDKKVIKKILQAGEGYERPNEGAVVNLKLIGKLQDGTVFLKKGDDEELFQFKTDEEQVIHGLDRAVMTMKKGEVALLTIAPEYAFGSSESKQELAVIPPNSTVYYEVELVSFEKEKESWDMNTEEKIEAAGRKKEEGNVLFKSGKYARASKRYEKAVKYIEYDSAFSEEEKKQAKALKVACNLNNAACKLKLKDYKEAEKLCTKVLELESRNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPDNREVKLEYKTLKEKVKEYNKKEAKFYGNMFAKMNKPESLDNSKQATKDAEPMSIDSKA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0475 570 Gene3D - 262 381 IPR046357 GO:0003755
Dere12g0475 570 FunFam Peptidylprolyl isomerase 262 382 - -
Dere12g0475 570 MobiDBLite consensus disorder prediction 1 22 - -
Dere12g0475 570 FunFam Peptidylprolyl isomerase 385 540 - -
Dere12g0475 570 Gene3D - 31 147 IPR046357 GO:0003755
Dere12g0475 570 Gene3D - 148 261 IPR046357 GO:0003755
Dere12g0475 570 MobiDBLite consensus disorder prediction 548 570 - -
Dere12g0475 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 380 IPR001179 GO:0003755
Dere12g0475 570 MobiDBLite consensus disorder prediction 1 19 - -
Dere12g0475 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 168 258 IPR001179 GO:0003755
Dere12g0475 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 377 IPR001179 GO:0003755
Dere12g0475 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 141 IPR001179 GO:0003755
Dere12g0475 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Dere12g0475 570 SUPERFAMILY TPR-like 385 546 IPR011990 GO:0005515
Dere12g0475 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Dere12g0475 570 Coils Coil 513 533 - -
Dere12g0475 570 FunFam Peptidylprolyl isomerase 148 261 - -
Dere12g0475 570 Pfam Tetratricopeptide repeat 480 513 IPR001440 GO:0005515
Dere12g0475 570 SMART tpr_5 446 479 IPR019734 GO:0005515
Dere12g0475 570 SMART tpr_5 480 513 IPR019734 GO:0005515
Dere12g0475 570 SMART tpr_5 397 430 IPR019734 GO:0005515
Dere12g0475 570 Gene3D Tetratricopeptide repeat domain 383 540 IPR011990 GO:0005515
Dere12g0475 570 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Dere12g0475 570 PANTHER PEPTIDYLPROLYL ISOMERASE 11 147 - -
Dere12g0475 570 SUPERFAMILY FKBP-like 34 152 - -
Dere12g0475 570 SUPERFAMILY FKBP-like 264 397 - -
Dere12g0475 570 SUPERFAMILY FKBP-like 149 264 - -
Dere12g0475 570 FunFam Peptidylprolyl isomerase 29 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0475 Dere-ChrDere12 7973291 7977885 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0475 16 570 Calmodulin-binding Proteins AT5G48570 80.143 0.0 887