Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0474 ATGAAGAAAGGTGAAAATGCCATTTTCACCACCCCTCCTGAGCTAGCATATGGGAAATTTGGTATCCGTGGAATAATTCCTCCCAATGCTACTCTTCAATTTGATGTTGAGTTGCTGTCTTGGACTAGTGTGAAGGACATGAGCAAGGATGTTAAATATGAAGCTCGGCTTGAAGATGGAACGCTGGTATCAAAATCTGATGGAATGGAGTTCACAGTGAGAGAGGATGGCTTTGGTGAGAAGGGGAAGACAGCACAAGGTGATGAAGGTGCAGTTCCTCCAAATGCTACTTTGCATATTACTCTTGAGTTAGTATCTTGGAAGACTGTTTCAGAAGTAACTGATGATAAGAAGAATAAGGATTCAGCGCTGCCGGAAACGACACCGGCGAAGTACGACTTCACCCTCAACGAACAACCCTCTTTATTTTCGACGTCTCCATCTGGTAAGGCCGTTGAGATGAGTTATTGGTCTCCAGCATCGGTTCTTAGTAATCAACTTATACTATTGTCTGCTGCAACTGCCCAATCTTCTAGTGATACCAAATGCAGCGCCAGTTTTATATCTGTAAGTCCAAGCAGAGGAAGGTGCTGTCTTTCAGTTGCTGAGGACCATTATAAAGTCAGGAGACTCGGGATTACTGGTGTAATTAAATCTGGCCGAGGGTTATCAAATTTGCAGGCACAACGAGGAGCTTGGGAAGAACCTGATGATGGCAGTGGTAGTGAGTATGATGAAGATGAAGAAGATGAGGAAATGGAAGATGAGAATTATGGCCTTGAAAGTGATTGGGAGGAGGAAGAGACTAAGACTTCAGCTGTTAATAATGTTATTTCAGCGGAAAAGTATGGGGAGGAGATTAAGAAAGAGGTTGAACAGCTTTTGGAGCCAGAAGAAAGAGCAGTCTTGCAACAGAATCTAACTCCTAACTTGGAAAAAATTTCAACTGCAAAATGGAGCCCACTGCGCACTTTAGCGCTATCAACACAGATAAGTTGCATGGATAAGCTGCTTGAAAATGGTGTTGATATTGATCTTATGAACAAGGAAGGTCTCACTGCCCTTCATAAAGCTATCATAGGAAAAAAAGAAGCTGTTATAAGCCATCTTTTACGAAAAGGTGCAAGTCCTCATGTCCAGGATAAGGATGGTGCTACCCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGCAAACTGTAAAGTTATTGATCAAATATAAGGTTGATGTCAACGTTGCAGATAATGGAGGTTGGACTCCATTGCATATTGCTATTCAAAGCAGAAATAGAGATATTGCAAAAATTTTGTTAGTTAACGGTGCAGATAAGACAAGAAGAAATAAGGATGGGAAAACAGCACTGGATCTAAGTTTATGTTATGGGAAGGACTTCAAATCTTATGACCTTGCCAAATTGCTGAAGGTAGTTCCAGCTGACTGA 1440 0.4174 MKKGENAIFTTPPELAYGKFGIRGIIPPNATLQFDVELLSWTSVKDMSKDVKYEARLEDGTLVSKSDGMEFTVREDGFGEKGKTAQGDEGAVPPNATLHITLELVSWKTVSEVTDDKKNKDSALPETTPAKYDFTLNEQPSLFSTSPSGKAVEMSYWSPASVLSNQLILLSAATAQSSSDTKCSASFISVSPSRGRCCLSVAEDHYKVRRLGITGVIKSGRGLSNLQAQRGAWEEPDDGSGSEYDEDEEDEEMEDENYGLESDWEEEETKTSAVNNVISAEKYGEEIKKEVEQLLEPEERAVLQQNLTPNLEKISTAKWSPLRTLALSTQISCMDKLLENGVDIDLMNKEGLTALHKAIIGKKEAVISHLLRKGASPHVQDKDGATPLHYAVQVGAKQTVKLLIKYKVDVNVADNGGWTPLHIAIQSRNRDIAKILLVNGADKTRRNKDGKTALDLSLCYGKDFKSYDLAKLLKVVPAD 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0474 479 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1 39 IPR001179 GO:0003755
Dere12g0474 479 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1 42 IPR001179 GO:0003755
Dere12g0474 479 ProSiteProfiles Ankyrin repeat profile. 416 448 IPR002110 GO:0005515
Dere12g0474 479 ProSiteProfiles Ankyrin repeat region circular profile. 383 415 - -
Dere12g0474 479 ProSiteProfiles Ankyrin repeat profile. 383 415 IPR002110 GO:0005515
Dere12g0474 479 MobiDBLite consensus disorder prediction 227 271 - -
Dere12g0474 479 Pfam Ankyrin repeats (many copies) 320 365 IPR002110 GO:0005515
Dere12g0474 479 Pfam Ankyrin repeats (3 copies) 367 447 IPR002110 GO:0005515
Dere12g0474 479 SUPERFAMILY Ankyrin repeat 310 461 IPR036770 -
Dere12g0474 479 Gene3D - 384 463 IPR036770 -
Dere12g0474 479 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 258 474 - -
Dere12g0474 479 SMART ANK_2a 416 445 IPR002110 GO:0005515
Dere12g0474 479 SMART ANK_2a 350 379 IPR002110 GO:0005515
Dere12g0474 479 SMART ANK_2a 383 412 IPR002110 GO:0005515
Dere12g0474 479 SMART ANK_2a 317 346 IPR002110 GO:0005515
Dere12g0474 479 Gene3D - 1 50 IPR046357 GO:0003755
Dere12g0474 479 ProSiteProfiles Ankyrin repeat profile. 350 382 IPR002110 GO:0005515
Dere12g0474 479 MobiDBLite consensus disorder prediction 238 263 - -
Dere12g0474 479 SUPERFAMILY FKBP-like 1 46 - -
Dere12g0474 479 Gene3D - 276 383 IPR036770 -
Dere12g0474 479 ProSiteProfiles Ankyrin repeat region circular profile. 416 442 - -
Dere12g0474 479 ProSiteProfiles Ankyrin repeat region circular profile. 350 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0474 Dere-ChrDere12 7957730 7963768 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0474 1 126 Calmodulin-binding Proteins AT3G25230 51.412 2.02e-41 154