Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0471 ATGAGTTATTGGTCTCCAGCATCCGTTCTTAGTAATCAACTTATATTATTGTCTGCTGCAACTGCCAAATCTTCTATTGATACCAAATGCAGCGCCAGTTTTATATCTGTAAGTCCAAGCAGAGGAAGGTGCTGTCTTTCAGTTGCTGACGACCACTATAAAGTCAGGAGACTCGGGATTACTGGTGTAATTAAATCTGGCCGAGGGTTATCAAATTTGCAGGCCCAACGAGGAGCTTGGGAAGAACCTGATGATGGCAGTGGTAGTGAGTATGATGAAGATGAGGAAATGGAAGATGAGAATTATGGCCTTGAAAGTGATTGGGAGGAGGAAGAGACTAAGACTTCAGCTGTTAATAATGTTATTTCAGCGGACAAGTATGGGGAGGAGATTAAGAAAGAGGTTGACCAGCTTTTGGAGCCAGAAGAAAGAGCAGTCTTGCAACAGAATCTAACTCCTAACTTGGAAAAAATTTCAACTGCAAAATGGAGCCCACTGCACACTTTAGCGCTATCAAGACAGATAAGTTGCATGGATAAGCTGCTTGAAAATGGTGTTGATATTGATCTTATGAACAAGGAAGGTCTCACTGCCCTTCATAAAGCTATCATAGGTAAAAAAGAAGCTGTTATAAGCCATCTTTTACGAAAAGGTGCAAGTCCTCATGTCCAGGATAAGGATGGTGCTACCCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGCAAACTGTAAAGTTATTGATCAAATATAAGGTTGATGTCAACGTTGCAGATAATGGAGGTTGGACTCCATTGCACATTGCTATTCAAAGCAGAAATAGAGATATTGCAAAAATTTTGTTAGTTAACGGTGCAGATAAGACAAGAAGAAATAAGGATGGGAAAACAGCATTGGATCTAAGTTTATGTTATGGGAAGGACTTCAAATCTTATGACCTTGCCAAATTGCTGAAGGTAGTTCCAGCGGACAGAGATCTATGA 981 0.4057 MSYWSPASVLSNQLILLSAATAKSSIDTKCSASFISVSPSRGRCCLSVADDHYKVRRLGITGVIKSGRGLSNLQAQRGAWEEPDDGSGSEYDEDEEMEDENYGLESDWEEEETKTSAVNNVISADKYGEEIKKEVDQLLEPEERAVLQQNLTPNLEKISTAKWSPLHTLALSRQISCMDKLLENGVDIDLMNKEGLTALHKAIIGKKEAVISHLLRKGASPHVQDKDGATPLHYAVQVGAKQTVKLLIKYKVDVNVADNGGWTPLHIAIQSRNRDIAKILLVNGADKTRRNKDGKTALDLSLCYGKDFKSYDLAKLLKVVPADRDL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0471 326 ProSiteProfiles Ankyrin repeat profile. 227 259 IPR002110 GO:0005515
Dere12g0471 326 ProSiteProfiles Ankyrin repeat profile. 161 193 IPR002110 GO:0005515
Dere12g0471 326 SUPERFAMILY Ankyrin repeat 154 305 IPR036770 -
Dere12g0471 326 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 130 318 - -
Dere12g0471 326 MobiDBLite consensus disorder prediction 74 110 - -
Dere12g0471 326 ProSiteProfiles Ankyrin repeat region circular profile. 227 259 - -
Dere12g0471 326 ProSiteProfiles Ankyrin repeat profile. 260 292 IPR002110 GO:0005515
Dere12g0471 326 Gene3D - 121 231 IPR036770 -
Dere12g0471 326 Gene3D - 232 320 IPR036770 -
Dere12g0471 326 Pfam Ankyrin repeats (3 copies) 209 291 IPR002110 GO:0005515
Dere12g0471 326 ProSiteProfiles Ankyrin repeat region circular profile. 194 226 - -
Dere12g0471 326 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Dere12g0471 326 SMART ANK_2a 293 326 IPR002110 GO:0005515
Dere12g0471 326 SMART ANK_2a 227 256 IPR002110 GO:0005515
Dere12g0471 326 SMART ANK_2a 161 190 IPR002110 GO:0005515
Dere12g0471 326 SMART ANK_2a 194 223 IPR002110 GO:0005515
Dere12g0471 326 SMART ANK_2a 260 289 IPR002110 GO:0005515
Dere12g0471 326 ProSiteProfiles Ankyrin repeat region circular profile. 260 286 - -
Dere12g0471 326 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0471 Dere-ChrDere12 7928573 7931020 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0471 166 286 Ion Channels AT2G25600 33.884 9.82e-09 54.7