Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere12g0449 | ATGGAAGCCTCTTCAACGTATGGATTGGAATCTCAATTCCCACCTCACCCGCTCTTAAACCCTTTCTCTCGCTCTCTCTCTCTCTTCTCCTTCCTGTTCTACTGCAAGATCCAGGGCAAAACCCTAGCGAAGAGGGAGGTGAGAAGAAGTCGTAGCGCCACGCAAAGAAATTCCTTCTCTGCTGTTACGTCGAGCGATCTTTTCTCTGGCTCCCTGAAATCGTTGGTGATGGCATCTTCAGAGCAGCTAGCCCCAGCTAGAACGTCTCCTGCAGCTGATATTGTTGGTAATGCCTTTGTTGAACAGTACTACCATATGTTGCATGAAAGCCCTCAACTTGTGCATAAGTTTTACCAAGATGATAGTAAGCTTGGGCGTCCAGAAAAAAATGGTATAATGGGTATTACCACCACAATGCAAGATATTAATGAGAAAATACTATCGCTGGGTGAGTTCATTGCAGAGATCATATCTGTGGACGCACAAGAATCTTATGGTGGAGGAGTTCTAGTCCTGGTCACTGGGTTTATGATTGGAAAGGACAGCACGAGGCAAAAATTTACACAATGTTTCTTCCTTGCGCCTCAAGAAAATGGTTACTTTGTCTTGAATGATGTATTCAGATATGTTGATGACAATGGAAACCAATGTTCTATTGATGAGGTTGAATCTCCTGCAACTCCTGATAACGATCCTTCTTTGCAGCAGATGCACGTACCTGAACAGAAGGTTCTGACAGCTGAGGATATTGACAGAGAGGAGGTATTCAATCCTGAAAATGGGCGACATCTGATTGAAGAAGAGGAGGCTCCTGTACCTGAGGTGGTTGATGAAATTCCTGATGATTCACTGATGGTGGCTGGTTCTACTTCTATAATTGAAGAAGTGCCTAAGCAGTCATATGCCTCTATCGTTAAGGTCATAAAGGAGAATGCCGCACCACCTCTGATGACATCTACTTCTGTGAGATCTGCCCCTAAGAGCCTGGAGCAACAGGTGACTCCTGCACCTCCGGCACCCAGCATGTCAGAAACCACTGGTTCTCATGCAACTGCTGCTGAACCGGGAAACAATCAAGAAAGTGAAGCTGAGGGTTATTCTATTTTTGTAAAAAGTTTGCCATCAAGTGCTACACCTGCCCTACTGGAGAATGAGTTCAAGAAGTTTGGTCCTATTAAAAGTGGTGGTGTCCAAGTCAGAAGCCAGAAGGGATTTTGCTATGGTTTTGTGGAGTTTGAAGTGGCAAGTGCTGTGCAAAGTGCGCTTGAGGCTTCACCAGTTGTCATCAATGGGCGCAATGTTTTCGTTGAGACAAAGAGATCGACTAATCGAGGGAATAGCAGGCCACGATTCATATCTGGAAGGGGGGCAGGATATAGGAATGAGGGTGGAAGAGGACGTGGAAACCATGGAAATGGCCGAAGCTATAACAGAGGTGACTTTAACGGCAGGGCTGAACCTGGGTACAGGAATGGCAATCGAGGAGGATATCCTAACCGTGGAGGTGATGGATTTCATAGAGTTGATCAAATGGGAAACACTGGTGGCCGTGTGAATCGTACTGGTGGGCTGGGTGTTAATTCGATGATTAAAAATACATCTGTTCATGTTCCTGCTCCTGCATGA | 1626 | 0.4569 | MEASSTYGLESQFPPHPLLNPFSRSLSLFSFLFYCKIQGKTLAKREVRRSRSATQRNSFSAVTSSDLFSGSLKSLVMASSEQLAPARTSPAADIVGNAFVEQYYHMLHESPQLVHKFYQDDSKLGRPEKNGIMGITTTMQDINEKILSLGEFIAEIISVDAQESYGGGVLVLVTGFMIGKDSTRQKFTQCFFLAPQENGYFVLNDVFRYVDDNGNQCSIDEVESPATPDNDPSLQQMHVPEQKVLTAEDIDREEVFNPENGRHLIEEEEAPVPEVVDEIPDDSLMVAGSTSIIEEVPKQSYASIVKVIKENAAPPLMTSTSVRSAPKSLEQQVTPAPPAPSMSETTGSHATAAEPGNNQESEAEGYSIFVKSLPSSATPALLENEFKKFGPIKSGGVQVRSQKGFCYGFVEFEVASAVQSALEASPVVINGRNVFVETKRSTNRGNSRPRFISGRGAGYRNEGGRGRGNHGNGRSYNRGDFNGRAEPGYRNGNRGGYPNRGGDGFHRVDQMGNTGGRVNRTGGLGVNSMIKNTSVHVPAPA | 541 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere12g0449 | 541 | Gene3D | - | 84 | 215 | - | - | |
Dere12g0449 | 541 | CDD | RRM_SF | 368 | 437 | - | - | |
Dere12g0449 | 541 | MobiDBLite | consensus disorder prediction | 318 | 363 | - | - | |
Dere12g0449 | 541 | SUPERFAMILY | RNA-binding domain, RBD | 355 | 473 | IPR035979 | GO:0003676 | |
Dere12g0449 | 541 | Gene3D | - | 356 | 477 | IPR012677 | - | |
Dere12g0449 | 541 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 368 | 424 | IPR000504 | GO:0003723 | |
Dere12g0449 | 541 | MobiDBLite | consensus disorder prediction | 441 | 527 | - | - | |
Dere12g0449 | 541 | FunFam | Nuclear transport factor 2 family protein | 86 | 213 | - | - | |
Dere12g0449 | 541 | PANTHER | RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN | 92 | 502 | IPR039539 | - | |
Dere12g0449 | 541 | Pfam | Nuclear transport factor 2 (NTF2) domain | 95 | 209 | IPR002075 | - | |
Dere12g0449 | 541 | ProSiteProfiles | Nuclear transport factor 2 domain profile. | 95 | 209 | IPR018222 | - | |
Dere12g0449 | 541 | SMART | rrm1_1 | 367 | 437 | IPR000504 | GO:0003723 | |
Dere12g0449 | 541 | SUPERFAMILY | NTF2-like | 92 | 210 | IPR032710 | - | |
Dere12g0449 | 541 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 366 | 441 | IPR000504 | GO:0003723 | |
Dere12g0449 | 541 | CDD | NTF2 | 92 | 211 | IPR018222 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere12g0449 | Dere-ChrDere12 | 7637435 | 7644291 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere12g0449 | 367 | 436 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 37.500 | 1.18e-06 | 49.3 |