Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0449 ATGGAAGCCTCTTCAACGTATGGATTGGAATCTCAATTCCCACCTCACCCGCTCTTAAACCCTTTCTCTCGCTCTCTCTCTCTCTTCTCCTTCCTGTTCTACTGCAAGATCCAGGGCAAAACCCTAGCGAAGAGGGAGGTGAGAAGAAGTCGTAGCGCCACGCAAAGAAATTCCTTCTCTGCTGTTACGTCGAGCGATCTTTTCTCTGGCTCCCTGAAATCGTTGGTGATGGCATCTTCAGAGCAGCTAGCCCCAGCTAGAACGTCTCCTGCAGCTGATATTGTTGGTAATGCCTTTGTTGAACAGTACTACCATATGTTGCATGAAAGCCCTCAACTTGTGCATAAGTTTTACCAAGATGATAGTAAGCTTGGGCGTCCAGAAAAAAATGGTATAATGGGTATTACCACCACAATGCAAGATATTAATGAGAAAATACTATCGCTGGGTGAGTTCATTGCAGAGATCATATCTGTGGACGCACAAGAATCTTATGGTGGAGGAGTTCTAGTCCTGGTCACTGGGTTTATGATTGGAAAGGACAGCACGAGGCAAAAATTTACACAATGTTTCTTCCTTGCGCCTCAAGAAAATGGTTACTTTGTCTTGAATGATGTATTCAGATATGTTGATGACAATGGAAACCAATGTTCTATTGATGAGGTTGAATCTCCTGCAACTCCTGATAACGATCCTTCTTTGCAGCAGATGCACGTACCTGAACAGAAGGTTCTGACAGCTGAGGATATTGACAGAGAGGAGGTATTCAATCCTGAAAATGGGCGACATCTGATTGAAGAAGAGGAGGCTCCTGTACCTGAGGTGGTTGATGAAATTCCTGATGATTCACTGATGGTGGCTGGTTCTACTTCTATAATTGAAGAAGTGCCTAAGCAGTCATATGCCTCTATCGTTAAGGTCATAAAGGAGAATGCCGCACCACCTCTGATGACATCTACTTCTGTGAGATCTGCCCCTAAGAGCCTGGAGCAACAGGTGACTCCTGCACCTCCGGCACCCAGCATGTCAGAAACCACTGGTTCTCATGCAACTGCTGCTGAACCGGGAAACAATCAAGAAAGTGAAGCTGAGGGTTATTCTATTTTTGTAAAAAGTTTGCCATCAAGTGCTACACCTGCCCTACTGGAGAATGAGTTCAAGAAGTTTGGTCCTATTAAAAGTGGTGGTGTCCAAGTCAGAAGCCAGAAGGGATTTTGCTATGGTTTTGTGGAGTTTGAAGTGGCAAGTGCTGTGCAAAGTGCGCTTGAGGCTTCACCAGTTGTCATCAATGGGCGCAATGTTTTCGTTGAGACAAAGAGATCGACTAATCGAGGGAATAGCAGGCCACGATTCATATCTGGAAGGGGGGCAGGATATAGGAATGAGGGTGGAAGAGGACGTGGAAACCATGGAAATGGCCGAAGCTATAACAGAGGTGACTTTAACGGCAGGGCTGAACCTGGGTACAGGAATGGCAATCGAGGAGGATATCCTAACCGTGGAGGTGATGGATTTCATAGAGTTGATCAAATGGGAAACACTGGTGGCCGTGTGAATCGTACTGGTGGGCTGGGTGTTAATTCGATGATTAAAAATACATCTGTTCATGTTCCTGCTCCTGCATGA 1626 0.4569 MEASSTYGLESQFPPHPLLNPFSRSLSLFSFLFYCKIQGKTLAKREVRRSRSATQRNSFSAVTSSDLFSGSLKSLVMASSEQLAPARTSPAADIVGNAFVEQYYHMLHESPQLVHKFYQDDSKLGRPEKNGIMGITTTMQDINEKILSLGEFIAEIISVDAQESYGGGVLVLVTGFMIGKDSTRQKFTQCFFLAPQENGYFVLNDVFRYVDDNGNQCSIDEVESPATPDNDPSLQQMHVPEQKVLTAEDIDREEVFNPENGRHLIEEEEAPVPEVVDEIPDDSLMVAGSTSIIEEVPKQSYASIVKVIKENAAPPLMTSTSVRSAPKSLEQQVTPAPPAPSMSETTGSHATAAEPGNNQESEAEGYSIFVKSLPSSATPALLENEFKKFGPIKSGGVQVRSQKGFCYGFVEFEVASAVQSALEASPVVINGRNVFVETKRSTNRGNSRPRFISGRGAGYRNEGGRGRGNHGNGRSYNRGDFNGRAEPGYRNGNRGGYPNRGGDGFHRVDQMGNTGGRVNRTGGLGVNSMIKNTSVHVPAPA 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0449 541 Gene3D - 84 215 - -
Dere12g0449 541 CDD RRM_SF 368 437 - -
Dere12g0449 541 MobiDBLite consensus disorder prediction 318 363 - -
Dere12g0449 541 SUPERFAMILY RNA-binding domain, RBD 355 473 IPR035979 GO:0003676
Dere12g0449 541 Gene3D - 356 477 IPR012677 -
Dere12g0449 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 368 424 IPR000504 GO:0003723
Dere12g0449 541 MobiDBLite consensus disorder prediction 441 527 - -
Dere12g0449 541 FunFam Nuclear transport factor 2 family protein 86 213 - -
Dere12g0449 541 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 92 502 IPR039539 -
Dere12g0449 541 Pfam Nuclear transport factor 2 (NTF2) domain 95 209 IPR002075 -
Dere12g0449 541 ProSiteProfiles Nuclear transport factor 2 domain profile. 95 209 IPR018222 -
Dere12g0449 541 SMART rrm1_1 367 437 IPR000504 GO:0003723
Dere12g0449 541 SUPERFAMILY NTF2-like 92 210 IPR032710 -
Dere12g0449 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 441 IPR000504 GO:0003723
Dere12g0449 541 CDD NTF2 92 211 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0449 Dere-ChrDere12 7637435 7644291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0449 367 436 Eukaryotic Initiation Factors Gene Family AT2G36660 37.500 1.18e-06 49.3