Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0430 ATGGCTTTTGCTTCCATGTCGTTTCCATTTCAGTCCAAATGCCTCCAAGTAATCCTCATCTTCTATGTGAACTTACTTTTCTTGCAACATATCAAAGCTGCATCTGCATTAGGCAACGAGACCGATTATTTGGCATTGCTCAATTTTAAAGACTCAATACCCGATGATCCTTATGAAATCTTGAGCTCCTGGAATAGTTCAAACCACTTCTGCAACTGGAATCGAATCACGTGTAGCCGCAAGCATCAACGAGTCACAGAGTTGGAGCTGCGAGGATGTCGTTTGCGTGGAACCATATCACCCCATGTTGGGAACCTCTCGTTCTTGAGAAATCTCTACCTCGACAACAACTTCTTCTACGGAGAAATCCCACCTGAGATTGGTCGTTTGTTCAGGCTGCAGCAACTTTCTCTTAGAGACAACACATTAACAGGTGATATTCCTATCAACTTGACAAGATGCTCAGAACTAAGGCACTTAGATTTGTCAGGCAATAGTCTTAGTGGTAAAATACCATTTCTGCTTGGCTCTCTTGGGAAGCTTGAAAAACTGAATATTTCTATAAATAGTTTAGATGGACAAATCCCAACTTCCCTATGGAATCTTTCTTCCCTTGATGGTCTTTCGGTTGCTTATAACAACTTGGAAGGAAGCATACCAGATGAAATAGGCCATTTGGAAAACTTGAGAACTCTATCATTTGCTGGGAACAAATTGTCTGGTAGCCTGCCCTTATCACTTTACAATATGTCATCTCTCACTCTCATATCAGCAGGAGCTAATCAACTTAGTGATACTCGGCTTCCTGACAACATATTCTCCACCCTCTCTAATTTGCAAACATTTGCAATTGGAGTGAATCAAATTTCAGGTTCAATCCCATCTTCCATCACAAATGCATCTTTTCTTCAAAACTTTGATATCTCTACAAACAGTTTTGTCGGAAAAGTTCCAGATCTTGGAGGCCTAAAAGATCTTCGGTGGCTAAATTTAGAACATAATAATCTTGGCGGCAACAATTCAAATAATGATTTGGATTTCATAACATCTCTGAAAAATAATAGCAAACTTGAAGGGTTCAGTCTATCTTACAACAAATTTGGAGGCGCTCTACCCAACTCCATAGGAAATTTGTCAAGCCAGTTCATTCAATTGATACTTGGTGGTAATCAGATATATGGTACTATTCCTGAAACTTTAGGAAAGTACACAAATCTAATTGCCTTGGCTTTAGAATACAACCAATTTTCTGGCACCATTCCACCTTCTTTGGGTAATATTCACAAGATGCAAATATTAAGTTTGGGGGGAAACCAACTTTTGGGAGAGATACCAGCCTCTGTAGGAAACCTCAGTAGATTGATTAAACTAAGTTTTTCAGAGAATATGCTTGAAGGAAAAATTCCCCCGATTTTTGGAAATATGGGAAATTTGTTATTCCTGGACCTTGCGAAAAACAATCTTAGTGGAACCATACCCTTGCAGGTTTTTGGTCTTTCCTCCTTGTCCATTTCACTAGACTTATCTTGTAACAAATTGAATGGATCTTTGCCAATTGTGATAGGAACCCTTAAAAACCTTGGAAGATTGAATATCTCTGAAAATCATCTATTCGGGGAGATTCCACGGTCTATAGGAGAGTGCGAAAGTATGGAATATCTTGACTTACGAGGGAATTCGTTCAATGGAACTATGCCTCCTTCACTAGCTTCATTGAAAGGCCTTAAGCATCTTGATCTATCACGAAATAACTTGTCTGGGTCAATTCCAATAAGTTTACAGACCAATTCTGTTCTTGAATACTTGAATGTTTCTTTTAATGGGTTAGAAGGTGAAGTACCAATCGAAGGGGTTTTCAGCAATGCAAGTACAATATCATTGGTCGGTAATAATAAGCTTTGTGGGGGTGTCTCTAAGCTGCATTTACCACCATGCCCTGTCAGAGTTGTCACACGAAGAAAAAACCTCAATTCGAAGCTCCTAGCAATTATAGTTTGTGTGGCTTTTTCTCTTCTATTGATATCAATACTTGCTCTCTATCGAATGCGAAAAAGAAACAGGAAACCATCGTCAAATTCGCCAACAACTGACCAACTTCACCAGGTGTCATATCAAAATCTACGCTATGCAACTGAAGGGTTCTCTACCATTAACTTGATAGGATCTGGAAGTTTTAGCTCAGTGTATAAAGGAAGGATTGAATCAGAAGATAGAATTGTTGCTATTAAGGTCTTAAATCTTCACAAGAAGGGAGCTCAAAAAAGCTTCATTTCCGAATGTAATGCACTTAGAAATATAAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGCTCAAGCATTGATTATGAGGGCAATCAATTTCAAGCACTAGTCTTTGAGTACATGTCAAATGGAAGCCTAGAAAAATGGTTACATCCTGGTCCCGAAAGTGCATATCAACCTCGAACGTTGGATCTTCGGCAAAGATTAAATATTGTATATGATATTGCCTACGCACTACATTATCTTCATTATGAATGTGAGCAGCCAGTTGTCCATTGTGATTTAAAGCCAAGCAATGTCCTTCTTGATGATGATATGGTTGCTCACGTGAGTGATTTTGGGTTAGCACGAATTCTTTCAACAATCAATGGTAGCTCTCAAAAGCAAACCAGCACAAATGGAATAAAAGGCACTATTGGCTATGCTCCTCCAGAGTATGGAATAGGTTCTGCGGTATCAACAGAGGGTGACGTATACTCTTTTGGAATTCTTGTTTTGGAAATGTTTACTGGAAGAAGACCCACCGATGAAATGTTCAAAGATGGCCACAATCTCCATAACTATGTGAAAGCTGCATATCCCAATAACCTTTTGGAGATTGTGGACCCAGCTTATCTACCACAACAAATACATCAAACAGCAACAACTACAGAAGAAGAAATTGGCATGGAGAAGATTGTGGACTCAGCTCATCTACCACAACAAATACATCAAACAGCAACAGCTACAGAAGAAGAAATTGACATGGAGGAGCGTACTCTAATGCATCCCAATGATGAGAAGTCTATATTTTCTCTCTTTGGGATTGGACTTGCTTGCTCAGTAGAATCACCAAAAGAAAGAGTGAACATGATGGATGTCATAAGGAAGCTAAATCAAATTGAAAAAAATTTCGTTTAG 3165 0.3889 MAFASMSFPFQSKCLQVILIFYVNLLFLQHIKAASALGNETDYLALLNFKDSIPDDPYEILSSWNSSNHFCNWNRITCSRKHQRVTELELRGCRLRGTISPHVGNLSFLRNLYLDNNFFYGEIPPEIGRLFRLQQLSLRDNTLTGDIPINLTRCSELRHLDLSGNSLSGKIPFLLGSLGKLEKLNISINSLDGQIPTSLWNLSSLDGLSVAYNNLEGSIPDEIGHLENLRTLSFAGNKLSGSLPLSLYNMSSLTLISAGANQLSDTRLPDNIFSTLSNLQTFAIGVNQISGSIPSSITNASFLQNFDISTNSFVGKVPDLGGLKDLRWLNLEHNNLGGNNSNNDLDFITSLKNNSKLEGFSLSYNKFGGALPNSIGNLSSQFIQLILGGNQIYGTIPETLGKYTNLIALALEYNQFSGTIPPSLGNIHKMQILSLGGNQLLGEIPASVGNLSRLIKLSFSENMLEGKIPPIFGNMGNLLFLDLAKNNLSGTIPLQVFGLSSLSISLDLSCNKLNGSLPIVIGTLKNLGRLNISENHLFGEIPRSIGECESMEYLDLRGNSFNGTMPPSLASLKGLKHLDLSRNNLSGSIPISLQTNSVLEYLNVSFNGLEGEVPIEGVFSNASTISLVGNNKLCGGVSKLHLPPCPVRVVTRRKNLNSKLLAIIVCVAFSLLLISILALYRMRKRNRKPSSNSPTTDQLHQVSYQNLRYATEGFSTINLIGSGSFSSVYKGRIESEDRIVAIKVLNLHKKGAQKSFISECNALRNIRHRNLVKILTCCSSIDYEGNQFQALVFEYMSNGSLEKWLHPGPESAYQPRTLDLRQRLNIVYDIAYALHYLHYECEQPVVHCDLKPSNVLLDDDMVAHVSDFGLARILSTINGSSQKQTSTNGIKGTIGYAPPEYGIGSAVSTEGDVYSFGILVLEMFTGRRPTDEMFKDGHNLHNYVKAAYPNNLLEIVDPAYLPQQIHQTATTTEEEIGMEKIVDSAHLPQQIHQTATATEEEIDMEERTLMHPNDEKSIFSLFGIGLACSVESPKERVNMMDVIRKLNQIEKNFV 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0430 1054 Pfam Leucine Rich Repeat 157 173 IPR001611 GO:0005515
Dere12g0430 1054 SMART LRR_typ_2 475 499 IPR003591 -
Dere12g0430 1054 SMART LRR_typ_2 106 130 IPR003591 -
Dere12g0430 1054 SMART LRR_typ_2 524 548 IPR003591 -
Dere12g0430 1054 SMART LRR_typ_2 250 275 IPR003591 -
Dere12g0430 1054 SMART LRR_typ_2 427 451 IPR003591 -
Dere12g0430 1054 SMART LRR_typ_2 226 249 IPR003591 -
Dere12g0430 1054 SMART LRR_typ_2 572 596 IPR003591 -
Dere12g0430 1054 SMART LRR_typ_2 178 202 IPR003591 -
Dere12g0430 1054 Gene3D Transferase(Phosphotransferase) domain 1 796 1053 - -
Dere12g0430 1054 SMART serkin_6 714 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0430 1054 SUPERFAMILY Protein kinase-like (PK-like) 687 1046 IPR011009 -
Dere12g0430 1054 Pfam Protein kinase domain 715 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0430 1054 Gene3D Phosphorylase Kinase; domain 1 676 795 - -
Dere12g0430 1054 Gene3D Ribonuclease Inhibitor 197 341 IPR032675 -
Dere12g0430 1054 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515
Dere12g0430 1054 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 355 648 - -
Dere12g0430 1054 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Dere12g0430 1054 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 79 354 - -
Dere12g0430 1054 Gene3D Ribonuclease Inhibitor 39 196 IPR032675 -
Dere12g0430 1054 Gene3D Ribonuclease Inhibitor 342 646 IPR032675 -
Dere12g0430 1054 SUPERFAMILY L domain-like 382 635 - -
Dere12g0430 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Dere12g0430 1054 FunFam LRR receptor-like serine/threonine-protein kinase EFR 685 795 - -
Dere12g0430 1054 ProSiteProfiles Protein kinase domain profile. 714 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0430 1054 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524
Dere12g0430 1054 Pfam Leucine rich repeat 551 609 IPR001611 GO:0005515
Dere12g0430 1054 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 350 1047 - -
Dere12g0430 1054 SUPERFAMILY L domain-like 39 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0430 Dere-ChrDere12 7278405 7281697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0430 39 1007 Receptor kinase-like Gene Family AT3G47570 46.552 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere12g0430 Pkinase 2.2e-43 CL0016