Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0399 ATGGAGTTGGGGAATTCATGGGTTGGCTTCTTTCTGTTTTATAGCTTCTGGGTTGGTGTTTTCTGTGATCAAGATGGTTTCTTAAGTCTATCATGTGGTGGAAGAACCAGTTTCAATGATTCATCAAACATTTCATGGACCCCAGACACAACATACATAAGCACAGGCAAGACAGCAACCGTCAGTTACAATGATGGTACCTCCTTATTAAATGTCTCAGCTCGATTCTTCCCAGATTCCCGAGGTCGAAAATGCTATAGAATACCAGTGAACAATGCAACAAGTCTTGTTCTTGTTAGAGCAAAATTCGTGTACAAGAACTATGATGGCCTTAGAAACCCGCCTACATTTTCTGTTTCTCTTGGGACAGCCATTGCTACTACTATAAATCTTGCTAAAGATGATCCATGGACAGAAGAGTTTCTGTGGACAGTCAATAAGGACACACTGCCCTTCTGTTTGATTGCGACCCCTAATGGTGGATCTCCTGTAATTTCTACCCTTGAAATCCGACCGCTTCCTCAAGGAGCCTACACTAATGGCATGGAAGATTTCTCAAATAAGTTATTAAGGAAGAGTTATCGTATTGATTGTGGCTACACCAATGAGTCTATCCAGTACCCTTTGGATCCATATGATAGAATATGGGATGCCGATAGAAGTTTTACACCCTTTCATGTTGCAACTGGGTTCAAGATTCAGCTTACTTTCAATCAGTCCAATCTCATGGAAAAACCACCAGCTGCTGTTCTTCAAACCGGAAGAGTTCTGGCACGGCGAAATCTGCTTACATATAATCTCCCTCTTGATGAGTTAGGGGACTACTACATCATTCTCTATTTTGCAGGGATTCTTCCTGTTTTCCCCACCTTTGACGTGTTCATAAATGGGGATCTTGTGAAATCAAACTACAAAATAAAGAGTTCAGAGATCAGCGCTCTATATGTTACACAGAAGGGAATCAGCAGCTTGAATATAACACTAAAGAGTATCAGCTTTTACCCTCAAATCAATGCATTTGAGGTATATCAGATAGTTGATATTCCATCTGAAGCTTCTTCAACCACAGTCTCAGCACTACAGGTTATTCAGCAGTCCACTGGCTTGGAGCTAGGATGGCAAGATGATCCATGCTTCCCTTCACCATGGGATCATATTTGGTGTGAAGGAAGCCTTGTTACGTCATTGGATCTTTCTGGTGTGAATTTCAGATCAATTAGTCCTACCTTTGGTGACTTGTTGGACCTCAAAAAATTAGATTTGCACAACACATCACTTGCTGGCGAAATACAGAACTTGGGTAGCTTGCAACATCTTGAGAAATTGAACCTTAGTTTCAATCGGCTCACATCCTTCGGCGTGGAGCTCGAGAACTTAATCAGCCTTCAAATCTTAGACTTGCAAAACAATAGTCTCCAAGGATTAGTTCCTGATAGCTTGGGAGAGTTAGAAAACCTCCACTTACTGAATCTGGAAAACAACAAACTACAAGGTTCACTACCAGAGTCTTTGAACAAAGAAACCTTAGAGATCAGAACATCCGGAAATTTGTGCCTTACTTTCTCCACAGCCATATGTGATGATGCATCATCCACTCCTTCAATTGAGACGCCACAAGTTACAATAATTCCCACAAAGAAGCACAATGTACATAACCATCTAGCAATCATACTAGGCATGGTTGGTGGAGCCACACTTGCGCTTTTTTTGATCTGTCTTTCAGTCTTGCTACAGATGAATAAGAAGAGATATGAAGTCTCTCACACAGCAAGAGCAGAATTGGATATAAGGAACTGGGGCGTAGCAAAAATTTTTTCCTACAAGGAAATCAAAGCAGCAACAGGAAACTTCAAAGAAGTTATAGGAAGGGGCAGTTTCGGATCAGTTTACCTTGGAAAGCTTCCAGATGGCAAATCAGTTGCTGTCAAAGTTCGGTTGGACAAAACCCTACTTGGAGCAGAGTCTTTTATCAATGAGGTTCATCTTCTGTCAAAAATCCGCCATCAAAATCTTGTGTCCTTAGAAGGGTTTTGTTATGAATCGAAGCATCAGATATTAGTTTATGAGTACTTGGCAGGTGGATCACTAGCTGATCACCTCTACGGTACAACCAGCCAAAAGCGGTTCTTAAGCTGGGTTCGAAGATTGAAAATTGCAGTTGATGCAGCAAAAGGATTGGACTATTTACATAATGGAAATGAACCACGAATCATACATCGTGATGTCAAGTGTAGTAATATCCTCTTGGACATTGAGATGAATGGCAAGGTCTGTGACTTTGGCCTCTCTAAACAAGTAACCCAGGCAGATGCAACTCATGTCACCACTGTTGTCAAGGGCACTGCTGGTTATCTGGACCCTGAGTACTATTCCACCCAACAGCTGACTGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTCTTTTGGAACTCATCTGTGGAAGAGAGCCATTGAGTCACTCTGGAACTCCAGACTCTTTCAATTTGGTGTTATGGGCCAAGCCTTACTTACAGGCAGATGCATTTGAAATTGTGGATGAAAGCATAAAAGGGACTTATGATCTAGAGAGCATGAGGAAGGCAGCCACCATTGCTGTGAAGTCAGTGGAAAGGGATGCATCCCTGAGGCCACCTATGGCAGAAGTGTTAGCAGAACTAAAGGAAGCCTATACTATTCAGCTCAGATTCCTTGAGTCTCCCTAA 2703 0.4188 MELGNSWVGFFLFYSFWVGVFCDQDGFLSLSCGGRTSFNDSSNISWTPDTTYISTGKTATVSYNDGTSLLNVSARFFPDSRGRKCYRIPVNNATSLVLVRAKFVYKNYDGLRNPPTFSVSLGTAIATTINLAKDDPWTEEFLWTVNKDTLPFCLIATPNGGSPVISTLEIRPLPQGAYTNGMEDFSNKLLRKSYRIDCGYTNESIQYPLDPYDRIWDADRSFTPFHVATGFKIQLTFNQSNLMEKPPAAVLQTGRVLARRNLLTYNLPLDELGDYYIILYFAGILPVFPTFDVFINGDLVKSNYKIKSSEISALYVTQKGISSLNITLKSISFYPQINAFEVYQIVDIPSEASSTTVSALQVIQQSTGLELGWQDDPCFPSPWDHIWCEGSLVTSLDLSGVNFRSISPTFGDLLDLKKLDLHNTSLAGEIQNLGSLQHLEKLNLSFNRLTSFGVELENLISLQILDLQNNSLQGLVPDSLGELENLHLLNLENNKLQGSLPESLNKETLEIRTSGNLCLTFSTAICDDASSTPSIETPQVTIIPTKKHNVHNHLAIILGMVGGATLALFLICLSVLLQMNKKRYEVSHTARAELDIRNWGVAKIFSYKEIKAATGNFKEVIGRGSFGSVYLGKLPDGKSVAVKVRLDKTLLGAESFINEVHLLSKIRHQNLVSLEGFCYESKHQILVYEYLAGGSLADHLYGTTSQKRFLSWVRRLKIAVDAAKGLDYLHNGNEPRIIHRDVKCSNILLDIEMNGKVCDFGLSKQVTQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHSGTPDSFNLVLWAKPYLQADAFEIVDESIKGTYDLESMRKAATIAVKSVERDASLRPPMAEVLAELKEAYTIQLRFLESP 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0399 900 SUPERFAMILY Protein kinase-like (PK-like) 602 890 IPR011009 -
Dere12g0399 900 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Dere12g0399 900 SUPERFAMILY L domain-like 359 506 - -
Dere12g0399 900 Pfam Malectin-like domain 30 345 IPR024788 -
Dere12g0399 900 CDD STKc_IRAK 621 888 - -
Dere12g0399 900 ProSiteProfiles Protein kinase domain profile. 615 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0399 900 ProSiteProfiles Leucine-rich repeat profile. 438 460 IPR001611 GO:0005515
Dere12g0399 900 SMART serkin_6 615 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0399 900 Pfam Leucine rich repeat 438 496 IPR001611 GO:0005515
Dere12g0399 900 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Dere12g0399 900 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 691 897 - -
Dere12g0399 900 Gene3D Transferase(Phosphotransferase) domain 1 691 895 - -
Dere12g0399 900 Gene3D - 192 347 - -
Dere12g0399 900 Gene3D Ribonuclease Inhibitor 356 528 IPR032675 -
Dere12g0399 900 Gene3D Phosphorylase Kinase; domain 1 578 690 - -
Dere12g0399 900 PANTHER OS07G0107800 PROTEIN-RELATED 455 890 - -
Dere12g0399 900 Pfam Protein tyrosine and serine/threonine kinase 617 884 IPR001245 GO:0004672|GO:0006468
Dere12g0399 900 FunFam serine/threonine-protein kinase PBS1-like 583 690 - -
Dere12g0399 900 SMART LRR_typ_2 436 458 IPR003591 -
Dere12g0399 900 SMART LRR_typ_2 459 482 IPR003591 -
Dere12g0399 900 SMART LRR_typ_2 483 506 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0399 Dere-ChrDere12 6699229 6706075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0399 7 899 Receptor kinase-like Gene Family AT5G48740 63.606 0.0 1110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Dere12g0399 Malectin_like 1e-55 CL0202