Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere12g0398 | ATGTCTCTTCCAAGACCTACAGAGAATAAAGCCACCCTTCAGCTCAAGGAAGGAGTTGCAGCTTCGTCTTCTTCTTCTCCTTCTTCATGGAATAGGCTAAACAACCATACCCACAAACCCTTCCCTCTACCCATGAGAAGCAAAATTGAGGAAAGTGATGAGGATCTGTTCACGGTGCCGGACGTGGAAGCGACGGCAAATGTGACGGCGACGGAGCCTCATTTTCAGGGAAAACGCAGAAGAGGAAGAAACCCTGCAGATAAAGAATGCAGACGCCTCAAGAGGCTGTTAAGAAATAGGGTTTCTGCACAACAAGCACGAGAAAGAAAGAAGGTGTATGTGAATGACTTGGAATCAAGAGCCAAAGAGTTGCAAGACAAGAATTCCAAGTTAGAAGAGCGTATCTCCACTTTGATCAATGAAAACACAATGCTTCGCAAGGTTCTTATGAACACAAGACCTAAAGTTGATGAGAGCAATGAACCAAAGCAGGATCAGTTAAGTAAAAGCTAA | 513 | 0.4444 | MSLPRPTENKATLQLKEGVAASSSSSPSSWNRLNNHTHKPFPLPMRSKIEESDEDLFTVPDVEATANVTATEPHFQGKRRRGRNPADKECRRLKRLLRNRVSAQQARERKKVYVNDLESRAKELQDKNSKLEERISTLINENTMLRKVLMNTRPKVDESNEPKQDQLSKS | 170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere12g0398 | 170 | Gene3D | Single helix bin | 110 | 151 | - | - | |
| Dere12g0398 | 170 | Coils | Coil | 107 | 148 | - | - | |
| Dere12g0398 | 170 | MobiDBLite | consensus disorder prediction | 16 | 36 | - | - | |
| Dere12g0398 | 170 | CDD | bZIP_HY5-like | 101 | 142 | - | - | |
| Dere12g0398 | 170 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Dere12g0398 | 170 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 89 | 152 | IPR004827 | GO:0003700|GO:0006355 | |
| Dere12g0398 | 170 | PANTHER | TRANSCRIPTIONAL ACTIVATOR HAC1 | 22 | 166 | IPR044280 | GO:0000981|GO:0045944 | |
| Dere12g0398 | 170 | SUPERFAMILY | Leucine zipper domain | 91 | 150 | IPR046347 | GO:0003700|GO:0006355 | |
| Dere12g0398 | 170 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 94 | 109 | IPR004827 | GO:0003700|GO:0006355 | |
| Dere12g0398 | 170 | SMART | brlzneu | 87 | 151 | IPR004827 | GO:0003700|GO:0006355 | |
| Dere12g0398 | 170 | Pfam | bZIP transcription factor | 88 | 147 | IPR004827 | GO:0003700|GO:0006355 | |
| Dere12g0398 | 170 | FunFam | Transcription factor HY5 | 110 | 151 | - | - | |
| Dere12g0398 | 170 | MobiDBLite | consensus disorder prediction | 151 | 170 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere12g0398 | Dere-ChrDere12 | 6683288 | 6685940 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere12g0398 | 49 | 159 | Basic region leucine zipper (bZIP) Transcription Factor Gene Family | AT3G17609 | 64.865 | 1.48e-42 | 137 |
Transcription factors information