Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0390 ATGAAGAAGATAAGATATATAACCACCGTTTCTTTAATACGCATACGGCTGCAAAGAGCTTGTGAGGGAGGCCGAGTGAAAATGGTGTCAGGATCAGGGATTTGCGCGAAGAGGGTGGTGGTGGACGCGCGCCACCACATGCTGGGTCGGCTGGCTTCCATTGTAGCCAAGGAGCTTCTCAACGGTCAGAAGGTGGTCGTTGTGAGGTGCGAGGAGATTTGCATCTCGGGGGGTCTTGTCAGGCAGAAGATGAAGTACATGAGGTTCCTCCGCAAGCGCATGAACACCAAGCCTTCTCATGGCCCAATTCATTTCCGAGCCCCTAGCAAGATTTTCTGGCGTACAGTACGCGGAATGATACCTCATAAGACAAAGCGAGGTGCTGCTGCACTTGCACGGTTGAAGGTTTTTGAAGGCATTCCCCCTCCATATGACAAGATGAAGAGAATGGTTGTGCCTGATGCTTTGAAGGTCTTGAGGCTTCAGAAAGGACACAAATACTGCTTGGTGGGCAAGTTGTCATCTGAGGTTGGGTGGAATTATTATGATACCATTAGGGAACTGGAAAAGAAGAGAAAGGAGAGAGCACAAGTGGCTTATGAGAGGAAGAAGCAGCTTGCCAAATTAAGAGTTAAGGCTGAGAAGATCACAGATGAGAAGCTTGGTTCCCAACTCGACATCCTTGCTCCGGTCAAGTACTGA 702 0.4915 MKKIRYITTVSLIRIRLQRACEGGRVKMVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKMKRMVVPDALKVLRLQKGHKYCLVGKLSSEVGWNYYDTIRELEKKRKERAQVAYERKKQLAKLRVKAEKITDEKLGSQLDILAPVKY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0390 233 FunFam 60S ribosomal protein L13a 182 233 - -
Dere12g0390 233 CDD Ribosomal_L13 39 140 IPR005822 GO:0003735|GO:0005840|GO:0006412
Dere12g0390 233 FunFam 60S ribosomal protein L13a-4 35 181 - -
Dere12g0390 233 Hamap 50S ribosomal protein L13 [rplM]. 38 162 IPR005822 GO:0003735|GO:0005840|GO:0006412
Dere12g0390 233 SUPERFAMILY Ribosomal protein L13 39 181 IPR036899 GO:0003735|GO:0005840|GO:0006412
Dere12g0390 233 Gene3D - 183 233 - -
Dere12g0390 233 Gene3D Ribosomal protein L13 35 181 IPR036899 GO:0003735|GO:0005840|GO:0006412
Dere12g0390 233 PANTHER RIBOSOMAL PROTEIN L13 28 211 IPR005822 GO:0003735|GO:0005840|GO:0006412
Dere12g0390 233 Pfam Ribosomal protein L13 37 142 IPR005822 GO:0003735|GO:0005840|GO:0006412
Dere12g0390 233 ProSitePatterns Ribosomal protein L13 signature. 116 139 IPR023563 GO:0003735|GO:0005840|GO:0006412
Dere12g0390 233 NCBIfam 50S ribosomal protein L13 39 181 IPR005755 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0390 Dere-ChrDere12 6511102 6516207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0390 28 233 Cytoplasmic Ribosomal Protein Gene Family AT4G13170 89.320 3.95e-140 389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0390 12 6511102 6516207 Dere12g0390 12 6511102 6516207 ECH