Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0378 ATGTTAAATTTAATTTCAAGTGCCTCGGAATCCGTACCTAAGCTTCGGGTCCGTGGGATATCCTTCTCTCCTAAATATCTCCGCTTTCCATTCTCGCTGTTTTCAAACGGTGGGCATATAGTGGAACGGTGTTACAAGTCAAAGTCTCTAGCAAGTTCGGTTTGTTTTGTGAAGTCAAGTATGGCTCAGCCTCAGAGTAACTGGGAAGCGGATAAAATGCTTGATGTTTATATTCATGATTATATGCTAAAAAGAAAATTACATGCGTCTGCAAAAGCTTTTATGACAGAAGGGAAAGTTGCCACTGATCCCGTAGGTAAGTTTTCAACAGCAATTGATGCACCTGGAGGATTTCTTTTTGAGTGGTGGTCTGTCTTTTGGGACATATTTATTGCAAGGACAAATGAGAAACATTCTGATTCCGCTGCAGCCTACATTGAGACCCAACAAATTAAGGCCAGAGAGCAACAACTACAAATACAGCAATTGCAACTAATGCAGCAGCGCAGTGTACAGTTACAGCGAAGAGATCTTAATCATCCTGCTCTTGGCAGTTCCTTAAATGCCATAAACTCTGAAGGAATATTGAGCCAGCCACCAGCGAGTGTGTTGGCCATGAAAATGTATGAGGAACGAATGAAACACCCTCATGCAATAGATTCAGATGCATCTCCTGGTCTTGTTGATGCCAATAGGGTGGCCCTTCTCAAATCAGCAACTAGTCATCAAGGCCAGTTGGTACCAGGAAATTCAGGGAATATGTCCACTGCATTGCACCAAATTCAGGCACGGATTCCATTGACAACTGACATTAAAGGAGAAGTTAACTTAGGTGTTGCTCAGAAGAGTTTGCCTATGGATACCACAGTTTATCGACAAGCATATTTACAGTCAAAATCTGGCCTAGGAAGTGCAGGATTGAATCAAGGAGTCACAAGTCTTCCATTGAAGGGTTGGCCTTTAACGGGAATTGATCAACTACGGCCTAGTTTAGGTGTACAAGTTCAGAAACCTAATTTGACAACCCAAAACCAATTTCTTTTGACGTCACAACAGCAGCAAGTCTTGGCACAGGCTCAGGCACAAAATAATCTTGTAAATTCTGCTCACCATGGTGATATGGATCCTCGTAGGCTTTGTGGTCTGCCACGGGGTAGCTTGAGTGCAAAGGATGGTCAGTTGACCAGAAATGATTCATCTATGTGCTCTCAAATGCAATCTGGTTCACCTAAGCTGATGAAGATGGCCCAAATGCAACACTCTTCATCTCAACAACAGGAGCATTTGCAGCAGCAGCAACTGCAGCAGGTTGTGCTTAATGTCACAGGTGAATGGAAGAGTGGATGGGTCTGGGAAAATAACAGAAAAAGAAAGCAACATTCTTCCTCTGGACCTGCCAATAGCACTGGTACTGCAAACACAGTGGGTCCTTCAGCTAATTCACCACCATCAACGCACACACCTGGTGATGGAATAAATACGGCAAGCAGCATGCAGCATGTTAATAGTGTGTCAAAGAGCTTGATGATGTATGGTACAGAGGGGACAGGCGCCGTTGCATCATCTTCAAATCTGCTGCCGGAGGACATTGAAAGATATGGCGATGTTGGTGCCTTGGATGATAATGTGGAGTCCTTCATATCAAATGGCGGAGGAGAAGGTGGAAATCTATATGGAACAATAGAACTAAGCTCAGCTGAGCACCAAAAGCAGTCTTCAAAAGGTTTCACCTTTGCTGAATTTGGATGCATACGAACAAGGAACAGTAAAGTTATTTGCTGCCATTTTTCTTCAGATGGAAAATTGCTTGCCAGTGCTGGACATGACAAGAAGGTTGTCCTCTGGAACATGGACAATTTACAGACACAGAGCACTCCAGAAGAACACAAACTAGGAATTACAGACGTTCGTTTTAGACCAAATTCAACTCAGTTGGCAACAGCCTCTGTTGATAAATCGGTGCGACTATGGGATGCAGCCAATCCCAGTTATTGCCTGCAAGAATATAGTGGGCAGAGTTCAGCTGTTCTGTCACTTGATTTCCACCCTAAGAAGACTGATCTTTTCTGTTTCTGTGGTAATGACAATGAGATTCGCTATTGGAATATTACTTCATCCTCCTGCACTCGTTTATTTAAGGGAGGTACTGCACAAGTGAGGTTTCAACCACAAGTGGGACAACTACTAGCAGCAGCTTCTGATAAAGTAGTGTCAATTTTTGATGTCGAAACTAACAGTCAAGTGTACTCATTCCAGGGTCATCCTGAACATGTGAACTATATATGCTGGGATGTAAATGGAGAAGTCTTGGCCTCTGTTAGTGAGAGCTTGGTGAAGATTTGGTCAGTGACCACAGGAGAATGCATTCAGGAGCTCAATTCCAGTGAAAACCAGTTTCATTCCTGTGTTTTTCATCCAAGTTATACAAATTTGTTGGTGATTGGAGGGACTTCTTGCTTGGAGTTGTGGAATATGGCAGAGAACAAAAGCATGACAATTCTTGCACATGAGAAAATAATTTCGGCTTTGGCTCAGTCTCCTGTCAGTGGAATGATTGCCTCAGCAAGTCATGACAGCTCTGTAAAGCTGTGGAAATAA 2598 0.4315 MLNLISSASESVPKLRVRGISFSPKYLRFPFSLFSNGGHIVERCYKSKSLASSVCFVKSSMAQPQSNWEADKMLDVYIHDYMLKRKLHASAKAFMTEGKVATDPVGKFSTAIDAPGGFLFEWWSVFWDIFIARTNEKHSDSAAAYIETQQIKAREQQLQIQQLQLMQQRSVQLQRRDLNHPALGSSLNAINSEGILSQPPASVLAMKMYEERMKHPHAIDSDASPGLVDANRVALLKSATSHQGQLVPGNSGNMSTALHQIQARIPLTTDIKGEVNLGVAQKSLPMDTTVYRQAYLQSKSGLGSAGLNQGVTSLPLKGWPLTGIDQLRPSLGVQVQKPNLTTQNQFLLTSQQQQVLAQAQAQNNLVNSAHHGDMDPRRLCGLPRGSLSAKDGQLTRNDSSMCSQMQSGSPKLMKMAQMQHSSSQQQEHLQQQQLQQVVLNVTGEWKSGWVWENNRKRKQHSSSGPANSTGTANTVGPSANSPPSTHTPGDGINTASSMQHVNSVSKSLMMYGTEGTGAVASSSNLLPEDIERYGDVGALDDNVESFISNGGGEGGNLYGTIELSSAEHQKQSSKGFTFAEFGCIRTRNSKVICCHFSSDGKLLASAGHDKKVVLWNMDNLQTQSTPEEHKLGITDVRFRPNSTQLATASVDKSVRLWDAANPSYCLQEYSGQSSAVLSLDFHPKKTDLFCFCGNDNEIRYWNITSSSCTRLFKGGTAQVRFQPQVGQLLAAASDKVVSIFDVETNSQVYSFQGHPEHVNYICWDVNGEVLASVSESLVKIWSVTTGECIQELNSSENQFHSCVFHPSYTNLLVIGGTSCLELWNMAENKSMTILAHEKIISALAQSPVSGMIASASHDSSVKLWK 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0378 865 Gene3D - 559 717 IPR015943 GO:0005515
Dere12g0378 865 ProSiteProfiles Trp-Asp (WD) repeats profile. 833 865 IPR001680 GO:0005515
Dere12g0378 865 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 711 IPR001680 GO:0005515
Dere12g0378 865 Gene3D - 718 865 IPR015943 GO:0005515
Dere12g0378 865 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 791 IPR001680 GO:0005515
Dere12g0378 865 MobiDBLite consensus disorder prediction 368 429 - -
Dere12g0378 865 ProSiteProfiles Trp-Asp (WD) repeats profile. 626 658 IPR001680 GO:0005515
Dere12g0378 865 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 626 658 - -
Dere12g0378 865 CDD WD40 588 865 - -
Dere12g0378 865 Pfam WD domain, G-beta repeat 621 658 IPR001680 GO:0005515
Dere12g0378 865 Pfam WD domain, G-beta repeat 747 782 IPR001680 GO:0005515
Dere12g0378 865 Pfam WD domain, G-beta repeat 591 616 IPR001680 GO:0005515
Dere12g0378 865 Pfam WD domain, G-beta repeat 665 702 IPR001680 GO:0005515
Dere12g0378 865 Pfam WD domain, G-beta repeat 832 865 IPR001680 GO:0005515
Dere12g0378 865 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 584 619 - -
Dere12g0378 865 ProSitePatterns Trp-Asp (WD) repeats signature. 603 617 IPR019775 -
Dere12g0378 865 MobiDBLite consensus disorder prediction 460 496 - -
Dere12g0378 865 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 833 865 - -
Dere12g0378 865 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 61 865 IPR044716 GO:0003714
Dere12g0378 865 MobiDBLite consensus disorder prediction 390 429 - -
Dere12g0378 865 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 625 IPR001680 GO:0005515
Dere12g0378 865 MobiDBLite consensus disorder prediction 456 496 - -
Dere12g0378 865 SUPERFAMILY WD40 repeat-like 582 865 IPR036322 GO:0005515
Dere12g0378 865 ProSiteProfiles LIS1 homology (LisH) motif profile. 70 102 IPR006594 GO:0005515
Dere12g0378 865 PRINTS G protein beta WD-40 repeat signature 603 617 IPR020472 -
Dere12g0378 865 PRINTS G protein beta WD-40 repeat signature 645 659 IPR020472 -
Dere12g0378 865 PRINTS G protein beta WD-40 repeat signature 852 865 IPR020472 -
Dere12g0378 865 SMART WD40_4 705 741 IPR001680 GO:0005515
Dere12g0378 865 SMART WD40_4 785 824 IPR001680 GO:0005515
Dere12g0378 865 SMART WD40_4 577 616 IPR001680 GO:0005515
Dere12g0378 865 SMART WD40_4 662 702 IPR001680 GO:0005515
Dere12g0378 865 SMART WD40_4 619 658 IPR001680 GO:0005515
Dere12g0378 865 SMART WD40_4 826 865 IPR001680 GO:0005515
Dere12g0378 865 SMART WD40_4 744 782 IPR001680 GO:0005515
Dere12g0378 865 Coils Coil 146 166 - -
Dere12g0378 865 Pfam LisH 72 98 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0378 Dere-ChrDere12 6367789 6377107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0378 602 783 U-box Gene Family AT2G33340 29.897 7.50e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Dere12g0378 WD40 0.032 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0378 12 6367789 6377107 Dere12g0378 12 6367789 6377107 ECH