Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0374 ATGAGTTGCTTTCCTTGTTTTTCATGCAATGACAAGAAAGCAACACAGAAGAAGCCCAAACATGGAATTAGGGCACAATTGCATGCATCTCAACCTCAAAAGGAAGCCTTACTTCCTCAGCCACGTTCAGAGTACCATTCTTCTAATCCAACAGAGGCTAGACCAAATAAGGACACCGACAAAGATACCGGCAACAACAACATCGCCGCCGAGACTTTCACCTTCCGGGAATTGGCTGCCGCAACAAAGAACTTCCGGCAAGAATGCCTCATTGGTGAAGGTGGATTTGGAAGAGTTTACAAAGGAAAACTTGAAAAAACCAACCAGATTGTAGCTGTGAAGCAGCTTGACAGAAATGGATTGCAAGGCAATAGAGAGTTTCTTGTGGAAGTGTTGATGTTAAGCCTATTGCACCATGAACATCTTGTGAATCTTATTGGATATTGCGCTGATGGGGATCAAAGGCTATTGGTGTATGAATACATGCCATTGGGATCTCTAGAAGATCATCTGCTTGATCTTGAACCACATGAGAGGCCGTTAGACTGGTTTGTGAGGATGAAGATAGCATTGGGAGCATCTAAAGGCCTTGAATATTTACATGACAAGGCCAATCCTCCTGTGATCTACCGTGATTTGAAAGCCTCAAACATCTTGCTAGACAGTGGGTTTAATGCAAAGCTCTCAGACTTTGGACTGGCCAAGCTTGGCCCTACAGGGGATAAGTCTCATGTGTCCTCCAGAGTTATGGGAACTTATGGGTACTGTGCCCCTGAGTATCAGAGAACTGGTCAGCTTACTGTGAAATCAGATGTGTACAGTTTTGGAGTTGTTTTGCTCGAACTCATCACCGGAAAACGAGTCATCGACAACACGAGACTTGCACGTGAGCAAAATCTAGTTTCTTGGGCACAACCAATATTCAAAGATCCTAATAGATACCTAGAACTTGCCGATCCCCTTCTTCATAGAAACTTCCCAGTAAGAGCATTCAACCAGGCAGTGGCAGTAGCCGCTATGTGCCTCAACGAGGAACCAGCGGTCCGGCCGTCGATCAGCGACGTCGTCACAGCCCTAACTTTTCTCGGCACAGAATCCAGTGCCACCGCTTCCCCCGACAACATTCCCTTGCCACCGCCGGAGCAACATTCCACCGGATCTGGAGGAGCAAATTTGAACCTTCTTGACAATGATAGCGTCGCCGAACGTCAACGAGCCGTCGCGGAAGCCATCAAATGGGGCTCGGCTTCTAGGAATAATGCTGTACAGAGAGCAAGCGCAAGTGCAAGTGCAAGTGCTACTGCTTCCTCATAG 1314 0.4711 MSCFPCFSCNDKKATQKKPKHGIRAQLHASQPQKEALLPQPRSEYHSSNPTEARPNKDTDKDTGNNNIAAETFTFRELAAATKNFRQECLIGEGGFGRVYKGKLEKTNQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHEHLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLEPHERPLDWFVRMKIALGASKGLEYLHDKANPPVIYRDLKASNILLDSGFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGKRVIDNTRLAREQNLVSWAQPIFKDPNRYLELADPLLHRNFPVRAFNQAVAVAAMCLNEEPAVRPSISDVVTALTFLGTESSATASPDNIPLPPPEQHSTGSGGANLNLLDNDSVAERQRAVAEAIKWGSASRNNAVQRASASASASATASS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0374 437 Gene3D Transferase(Phosphotransferase) domain 1 162 374 - -
Dere12g0374 437 CDD STKc_IRAK 91 360 - -
Dere12g0374 437 PANTHER OS07G0668900 PROTEIN 6 370 - -
Dere12g0374 437 SMART serkin_6 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0374 437 MobiDBLite consensus disorder prediction 380 394 - -
Dere12g0374 437 MobiDBLite consensus disorder prediction 416 437 - -
Dere12g0374 437 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0374 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Dere12g0374 437 MobiDBLite consensus disorder prediction 368 394 - -
Dere12g0374 437 MobiDBLite consensus disorder prediction 12 66 - -
Dere12g0374 437 SUPERFAMILY Protein kinase-like (PK-like) 71 380 IPR011009 -
Dere12g0374 437 Pfam Protein kinase domain 87 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0374 437 Gene3D Phosphorylase Kinase; domain 1 56 161 - -
Dere12g0374 437 FunFam Serine/threonine-protein kinase PBS1 162 375 - -
Dere12g0374 437 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Dere12g0374 437 FunFam Serine/threonine-protein kinase PBS1 57 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0374 Dere-ChrDere12 6323056 6328667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0374 1 418 Glycoside Hydrolase AT3G07070 67.221 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Dere12g0374 Pkinase 1.1e-47 CL0016