Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0351 ATGCTCATGGAACGGCAAAATTGTCAGACAGACACAAGTGGGGGAACTATCCTCAAAGTGACTTCTTATTGCATGTTTCAAAGTACTGACATGGAAGATGAGGAAAAAGTAGCCCGCAAGGTTGGAGGAGGAGGCCAAGCAGCAGGAGGAGAAGAAGAAGAGTCAAGAGTTTTCCCATGTCAGTTCTGTTCAAGAAAGTTTTATAGCTCTCAAGCTTTGGGAGGACACCAAAATGCCCACAAGAAAGAGAGAACAGCTGCAAGAAAGGCTAAAAGGGCGTTTGAGTATTCATCTGCTTCTTTTGCTTCTTCTCTGCCATCTCCAATGGTTTTTGCTCCAACCCATCAAATGGGCATTTTGAATCCTTCAATGTTCATCACCTCTCATGCTTCAAATCTTCGTTACCTCCAAACCCATCAAGCTTTAGACCATTTTGGATCAAATGGTGCACCTAGATTTGGTGGGAATGCTCTGTTTGATGAGGGAAGTTGTCCGAGCAGTCGATTCTGTGAAGGTCATGAAGAGAGAAGCTTCTTGAATTGGCAAAGGAATTTGTCATTGACAAGCGACAATCAGAGCGTTGGAATTATGAATCATTGTAAAGAGAAAGATCAAAATCTTGATTTGTCTCTTCATTTATAG 642 0.4221 MLMERQNCQTDTSGGTILKVTSYCMFQSTDMEDEEKVARKVGGGGQAAGGEEEESRVFPCQFCSRKFYSSQALGGHQNAHKKERTAARKAKRAFEYSSASFASSLPSPMVFAPTHQMGILNPSMFITSHASNLRYLQTHQALDHFGSNGAPRFGGNALFDEGSCPSSRFCEGHEERSFLNWQRNLSLTSDNQSVGIMNHCKEKDQNLDLSLHL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0351 213 Gene3D Classic Zinc Finger 46 106 - -
Dere12g0351 213 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Dere12g0351 213 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Dere12g0351 213 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Dere12g0351 213 PANTHER ZINC FINGER PROTEIN JAGGED 38 213 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0351 Dere-ChrDere12 5942772 5943670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0351 53 109 C2H2 Transcription Factor Family AT5G57520 59.649 1.04e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere12g0351 None None None