Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0349 ATGGCGGTCATGAAGCTCTTCTCTCTCTGCATTTTCATGTCCTTATCCTTCTTCTTCTGCTACACTAAATCTCTCTCTTTCTCGACCTCCTCTGACGTTGTACTTCTCTTGGGGAAAATCAAAACATCCCTGCAAGGTAACACGGAGAGCATCGTTTTGTCTTCTTGGAACTCCTCTGTGCCTCTCTGCCAATGGAGGGGTCTCGAGTGGGTCTTCTCCAATGCCTCTTCTCTCTCATGCACTGACTTTTCCTCACCCCACTGGACCAATCTTTCGCTCTTCAAAGACCCTTCGCTTCATTTGCTCTCTCTTCAACTTCCTTCGGCTAATCTCTCTGGTTCACTACCCAGAGAGATTTCCGAGTTCCCTATGCTTCAGACCCTCTATCTCAACATCAATTCGTTGAAAGGAACAATCCCTCTTGAACTTGGATATAGTTCCTCCCTCTCTGAAATCGATTTGAGTGGAAATTTTCTGAGCGGAGCTTTACCCCCATCGATCTGGAACTTGTGCGATAGGCTTGTTTCTCTCAGACTCCATGGAAATTCACTTTCTGGGTCTATTCCAGAACCGGCATTGCCAAATTGTTCTTGTGAGAATTTGCAATTTCTTGATTTGGGTACGAACCATATTTCTGGGAATTTCCCAGAATTCATTACTCGTTTTGGTGGGTTGAAACAGCTTGACTTGGGGGATAATATGTTTGTGGGTACAATTCCTCAGAGCTTAGCGGAGCTAAGGCTTGAGAAATTGAACCTTTCCCACAATAATTTTAGTGGGGTTTTGCCTACTTTTCAGGAACCCGAGTTTGGTTTGGAGGTTTTTGAAAGGAATAACCCAGACTTGTGTGGGCCACCCTTGAGAAGTTGTAGTGGAAATTCTAGAGCTAGACTAAGTGCTGGTGCTATTGCTGGTATAGTTATCAGTCTGATGGGTGGAAGTGTGGTTTTAGCTTCTCTGTTAATTGGGTTTGTGCAAAACAAGAAGAGGAAGGGTAGGGGAGAGAGTGATTATGAATTGGAGGAAGAAGAAGAAGAAGACGAGGAACATGAGGATAATAATAATGGTGGTGGTGGTGAGGGCAAGCTTATGTTGTTCCAAGGCGGTGAGAATTTGACATTAGACGATGTGCTGAATGCAACTGGGCAAGTTTTGGAGAAGACATGTTATGGGACTGTGTACAAGGCAAAGCTTGTTGATGGAGCAGGGACCATCGCTTTGAGGTTGTTGAGAGAAGGTTGCTGCAAGGACAGGGCTTCAAGCTTGCCAATTATAAAGCAGTTGGGGAAAATTCGTCATGAGAATTTGATTCCTTTGAAAGCTTTCTATCAAGGGAAGAGAGGGGAGAAGCTCCTTATTTATGATTATCTACCTCTCAGAACCCTTCATGATCTTCTACATGAAACTAAATCAGGAAAACCAGTGCTGAACTGGTCTAGGCGACACAAGATTGCATTGGGTATAGCCAGAGGACTTGCATATCTTCATACTGGACTTGATGTTCCAATTACTCATGGGTGTCTTAGATCAAAGAACACTCTTGTGGATGATTTTTTTGTTCCCAGGCTTACCGAGTTTGGGCTTGATAAACTAATGGTTCCAGCCGTTGCTGATGAAATGGTGGCACTTGCTAAGACTGATGGATACAAGGCTCCAGAGCTTCAGAGGATGAATAAATGTAATTCAAGAACCGATGTTTATGCATTTGGCATATTATTGTTGGAGATTTTGATTGGGAAGAAACCAGGGAAAAATGGGAGAGGTAGTGAATATGTGGATTTGCCTTCAATGGTGAAAGTGGCAGTTTTGGAGGAGACAACGATGGAAGTGTTTGATGTGGAGATTTTGAAAGGGATAAGAAGTCCCATGGAGGAAGGCTTAGTTCAGGCTTTGAAGCTAGCAATGGGTTGCTGTGCCCCAGTGGCTTCAGTTAGACCCAGCATGGATGAAGTTGTGAGACAGTTGGAGGAGAACAGACCAAGAAACAGGTCTGCTCTATACAGCCCTACAGAAACAAGAAGTGGAAGTGGTACCCCGTTTTGA 2043 0.441 MAVMKLFSLCIFMSLSFFFCYTKSLSFSTSSDVVLLLGKIKTSLQGNTESIVLSSWNSSVPLCQWRGLEWVFSNASSLSCTDFSSPHWTNLSLFKDPSLHLLSLQLPSANLSGSLPREISEFPMLQTLYLNINSLKGTIPLELGYSSSLSEIDLSGNFLSGALPPSIWNLCDRLVSLRLHGNSLSGSIPEPALPNCSCENLQFLDLGTNHISGNFPEFITRFGGLKQLDLGDNMFVGTIPQSLAELRLEKLNLSHNNFSGVLPTFQEPEFGLEVFERNNPDLCGPPLRSCSGNSRARLSAGAIAGIVISLMGGSVVLASLLIGFVQNKKRKGRGESDYELEEEEEEDEEHEDNNNGGGGEGKLMLFQGGENLTLDDVLNATGQVLEKTCYGTVYKAKLVDGAGTIALRLLREGCCKDRASSLPIIKQLGKIRHENLIPLKAFYQGKRGEKLLIYDYLPLRTLHDLLHETKSGKPVLNWSRRHKIALGIARGLAYLHTGLDVPITHGCLRSKNTLVDDFFVPRLTEFGLDKLMVPAVADEMVALAKTDGYKAPELQRMNKCNSRTDVYAFGILLLEILIGKKPGKNGRGSEYVDLPSMVKVAVLEETTMEVFDVEILKGIRSPMEEGLVQALKLAMGCCAPVASVRPSMDEVVRQLEENRPRNRSALYSPTETRSGSGTPF 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0349 680 FunFam Leucine-rich repeat receptor-like protein kinase 198 290 - -
Dere12g0349 680 SUPERFAMILY L domain-like 62 274 - -
Dere12g0349 680 MobiDBLite consensus disorder prediction 659 680 - -
Dere12g0349 680 SUPERFAMILY Protein kinase-like (PK-like) 383 656 IPR011009 -
Dere12g0349 680 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 96 188 - -
Dere12g0349 680 MobiDBLite consensus disorder prediction 338 353 - -
Dere12g0349 680 Gene3D Ribonuclease Inhibitor 174 292 IPR032675 -
Dere12g0349 680 Pfam Leucine Rich Repeat 148 170 IPR001611 GO:0005515
Dere12g0349 680 ProSiteProfiles Protein kinase domain profile. 379 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0349 680 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 190 IPR046959 -
Dere12g0349 680 Pfam Protein tyrosine and serine/threonine kinase 382 655 IPR001245 GO:0004672|GO:0006468
Dere12g0349 680 Gene3D Phosphorylase Kinase; domain 1 362 456 - -
Dere12g0349 680 Gene3D Ribonuclease Inhibitor 34 173 IPR032675 -
Dere12g0349 680 MobiDBLite consensus disorder prediction 333 361 - -
Dere12g0349 680 Pfam Leucine rich repeat 200 258 IPR001611 GO:0005515
Dere12g0349 680 Gene3D Transferase(Phosphotransferase) domain 1 459 668 - -
Dere12g0349 680 MobiDBLite consensus disorder prediction 661 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0349 Dere-ChrDere12 5919001 5921882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0349 12 680 Receptor kinase-like Gene Family AT3G24660 72.889 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere12g0349 PK_Tyr_Ser-Thr 9.9e-24 CL0016