Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0347 ATGGACGATTTGATTGAGGCAGGCCAGATGCTGCTTGCTAAGGAAATAAGCAATACTGATGATCTTAACAAGGGGAGGGAATCTGCTTTGAATGCGACTTTGAAAAAAGTTGAGGAAAACAATGCAAGACCACATGTGACATCTGCTAATTCGTACCAAACAAGAGAGGAAGAGAGAGCCAATGCAAAGCCAAGAGTAGCACTTGGGGCTTGGGGTTTTGAGGCAATGCCAATGCCGAGGCGGTCCTTGAGCAACCACAACAATCACCACCAAATGCCGAGGCAGCAATCTTTCACGCTTCTTCATCTTGTCTTCTTCACGCTTCTTCTTCTTCTTCCTGGTCTTTCATCTTCTTCAAATAGTGAAGCCCAAGCTCTACTTTCATGGCTCCACTCTTCCTCCTCCTCATCTGTTCCTCCGTCTTCTTTCTCTAGTTGGAACCCTTCAAACCCCAACCCTTGTAACTGGTCGTTCGTCAAATGCTCTTCACAGAACTTCGTCACAGAAATTAACATCCAAGGAATAGAACTAGCCCTTCCTTTTCCTCCCAAGATTTCAGCTTTTCCCTTTCTTCAGAAACTTGTCATTTCAGGTGCTAACCTTTCTGGGGTCATCTCACCTGACATTGGAAACTGCCCAGAACTTATAATAATTTATCTTAACTCAAATAATCTTGTGGGTATCATTCCTTCTAGCATTGGGAAGCTTAAAAACCTCCAAGAGTTGAGCTTGAACTCTAACCAGCTTTCTGGGGAAATCCCTAAGGAGATTGGTGATTGTGTTAGTTTGAAAAACCTAAATATTTTCGATAATAATCTTAGTGGGGCTCTTCCTGTTGAGTTGGGGAAGCTTTCAAATCTGGAGGTTGTAAGAGCAGGAGGGAACAATGGCATTATGGGCAAGATTCCAGATGCGCTTGGAGATTGCAGGAATTTGACTATAATAGGTCTTGCTGACACTAAAATCTCTGGTTCATTACCTGCTTCTTTGGGTAAGTTAAGTTTGCTTCAGACAATTTCTATTTACAGTACTCTGTTGTCTGGTGAGATTCCTCCCGAAATAGGCAATTGTTCTGAGCTTGTGAATTTGTTTTTGTATGAGAATGAGCTATTTGGTTCATTGCCAAAAGAGCTAGGTAAGCTTCAGAAGCTAGAAAAAATGTTGCTATGGCAGAATAATTTTGCTGGAAGCATACCTCAGGAAATTGGTAACTGTAGAAACTTGAAGATTCTTGATGTTTCTTTAAACTCTTTATCTGGAAAGATACCTATAACTTTTGGGAACCTCTCAAATCTTGAAGAGCTTATGCTAAGTAACAATAATATATCTGGTTCAATCCCACCCGTTCTTTCCAATCTTTCGAACCTCATACAGCTTCAGTTGGATGCTAATCAGATATCGGGTTCAATTCCGGCAGAACTAGGTAAGTTGGAGAAGCTTACTGTCTTTTTTGCGTGGCAGAACAAGCTTGAAGGAAGCATTCCATCTGAATTGGGTGGTTGTGCAAGCCTGGAAGCTCTTGATTTGTCATATAATGCACTCGCTGATAGCTTACCTCCAGGCTTGTTTCAACTTCAAAATTTGACCAAGCTTCTGGTAATCTCTAACCATGTTTCTGGTCCCATTCCTCAGGAGATTGGTAACTGCAGTTCTCTCATTCGGCTCCGGCTTTTGAACAACCGAATTAGTGGAGAGATTCCGAGAGAACTTGGTTTTCTCAATAACTTAAGCTTTCTTGATCTGTCTGACAATAATCTTAATGGTTCAGTACCAGTTGAACTAGGAAATTGCAAAGAACTGCAAATGCTGAACCTTAGCAACAACTCCCTTTCAGGTGTTTTGCCTAGCTCTTTATCTTCTCTCACAAGTCTTGAGGTTTTAGATGTTTCTCTGAATCACTTTTCAGGTGAAATTCCTAGTAGTATTGGCCAACTGACTTCACTTCTCAGGCTCATCCTAAGCAAAAACTTATTCACTGGATCGATACCCTCATTGATTGGCCTCTGTTCAGGTCTTCAACTGCTTGACCTCAGTAGCAACAACCTCTCAGGAAGCATTCCATCAGAACTATTTGATATAGAAGCACTTGACATTGCTTTAAATTTGAGTCACAATGCATTATCTGGAGTAATCCCACCACAGATTTCTTCTCTAAATAAGCTCTCTGCCCTAGACCTTTCGCACAACAAGCTTGAAGGGGATTTGATGGCATTTTCAGGACTAGAAAATCTTGTTTCTCTCAACATCTCCTACAACATGTTCACCGGTTATCTTCCAGACATCAAGTTATTCCACCAATTATCAGCAACAGATTTGGAAGGAAATCAGGGGTTGTGTCCTAATGGTCACAACTCATGCTTCATTAGCAGTTCTGCAATGACAAAAATGCTAAGTAATAGTGAATCTAAAAGGGCAGAGAAAATCAAATTGGGCATAGGATTGCTCAGTGCCTTTACCATTGCAATGGCAATCTTTGGAGTTTTTACCATCTTTCGAGCGAGGAAAATGGCTCGGGATGATATTGATTCTGAGATGGGTGGAGATTCAGGATCTTGGCAGTTCACACCATTCCAAAAGCTAAACTTCTCTGTTGATCAAGTCTTAAAATGTCTGGTTGACTCCAACGTGATAGGAAAAGGATGTTCCGGGGTTGTTTACCGTGCAGAAATGGAAAATGGCGATGTCATTGCTGTGAAAAAGCTATGGCCAACGACACTGGCTGCTAGATATAGTTCTCAAAATGACAAGCTAGCAGTTCATGGAGGAGGAGTCCGCGATTCCTTTTCAGCTGAGGTTAAAACCCTTGGTTCCATCCGACACAAGAACATTGTGAGGTTCCTAGGTTGCTGTTGGAATCGAAATACTCGGCTGCTTATGTATGACTATATGCCAAATGGGAGCCTAGGAAGTCTGCTTCATGAACGAAGTGGCGGAAACTGCTTAGAGTGGGACATCAGGTATCGGATATTGCTTGGGGCAGCTCAAGGTTTGGCTTATCTTCACCACGACTGTGTTCCTCCCATTGTTCATAGGGACATTAAAGCCAACAATATCCTCATAGGCCCTGAGTTTGAACCATACATAGCTGATTTTGGGCTTGCTAAACTTGTTGATGATAGAGATTTTGCTAGGTCCTCTAGCACACTTGCTGGTTCCTATGGCTACATTGCTCCTGAATATGGCTACATGATGAAGATAACAGAGAAAAGTGATGTGTACAGTTATGGCATTGTTGTGTTAGAAGTGCTAACAGGGAAGCAACCAATTGACCCGACAATACCAGATGGGCTCCACATTGTTGACTGGGTGAGACAGAAAAGAGGTGGAACAGAAGTTCTAGACCCAAGCCTATGTGCTAGGCCTGAACCAGAAATGGAAGAAATATTGCAGACTTTAGGGGTGGCGTTGCTCTGTGTGAACCCTAGCCCAGAAGATAGGCCAACCATGAAAGATGTGTCTGCAATGCTGAAAGAGATCAGGCAGGAGAGGGAGGAATATATGAAATTTGACATGCTTCTTCATGGATCTTCAGCAAATGAAGATAGTAACACTAATAATCATTCAGGTGAAGAGCCAAGTGGGAAGATGATGAAACACTCATACCCTATAAGCAGCAGCAACACTAATTTTTCTGCCTCTCTTTTGGTCTCTCCTTCCTCCTCCAATGCTAAAGTGACATTGAAATAG 3687 0.4218 MDDLIEAGQMLLAKEISNTDDLNKGRESALNATLKKVEENNARPHVTSANSYQTREEERANAKPRVALGAWGFEAMPMPRRSLSNHNNHHQMPRQQSFTLLHLVFFTLLLLLPGLSSSSNSEAQALLSWLHSSSSSSVPPSSFSSWNPSNPNPCNWSFVKCSSQNFVTEINIQGIELALPFPPKISAFPFLQKLVISGANLSGVISPDIGNCPELIIIYLNSNNLVGIIPSSIGKLKNLQELSLNSNQLSGEIPKEIGDCVSLKNLNIFDNNLSGALPVELGKLSNLEVVRAGGNNGIMGKIPDALGDCRNLTIIGLADTKISGSLPASLGKLSLLQTISIYSTLLSGEIPPEIGNCSELVNLFLYENELFGSLPKELGKLQKLEKMLLWQNNFAGSIPQEIGNCRNLKILDVSLNSLSGKIPITFGNLSNLEELMLSNNNISGSIPPVLSNLSNLIQLQLDANQISGSIPAELGKLEKLTVFFAWQNKLEGSIPSELGGCASLEALDLSYNALADSLPPGLFQLQNLTKLLVISNHVSGPIPQEIGNCSSLIRLRLLNNRISGEIPRELGFLNNLSFLDLSDNNLNGSVPVELGNCKELQMLNLSNNSLSGVLPSSLSSLTSLEVLDVSLNHFSGEIPSSIGQLTSLLRLILSKNLFTGSIPSLIGLCSGLQLLDLSSNNLSGSIPSELFDIEALDIALNLSHNALSGVIPPQISSLNKLSALDLSHNKLEGDLMAFSGLENLVSLNISYNMFTGYLPDIKLFHQLSATDLEGNQGLCPNGHNSCFISSSAMTKMLSNSESKRAEKIKLGIGLLSAFTIAMAIFGVFTIFRARKMARDDIDSEMGGDSGSWQFTPFQKLNFSVDQVLKCLVDSNVIGKGCSGVVYRAEMENGDVIAVKKLWPTTLAARYSSQNDKLAVHGGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGGNCLEWDIRYRILLGAAQGLAYLHHDCVPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDRDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGTEVLDPSLCARPEPEMEEILQTLGVALLCVNPSPEDRPTMKDVSAMLKEIRQEREEYMKFDMLLHGSSANEDSNTNNHSGEEPSGKMMKHSYPISSSNTNFSASLLVSPSSSNAKVTLK 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0347 1228 SUPERFAMILY L domain-like 147 342 - -
Dere12g0347 1228 Gene3D Ribonuclease Inhibitor 281 478 IPR032675 -
Dere12g0347 1228 PRINTS Leucine-rich repeat signature 718 731 - -
Dere12g0347 1228 PRINTS Leucine-rich repeat signature 672 685 - -
Dere12g0347 1228 Gene3D Transferase(Phosphotransferase) domain 1 963 1178 - -
Dere12g0347 1228 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 854 962 - -
Dere12g0347 1228 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 963 1174 - -
Dere12g0347 1228 FunFam Nuclear pore complex protein NUP107 119 277 - -
Dere12g0347 1228 ProSitePatterns Protein kinases ATP-binding region signature. 877 900 IPR017441 GO:0005524
Dere12g0347 1228 FunFam Predicted protein 278 376 - -
Dere12g0347 1228 SUPERFAMILY Protein kinase-like (PK-like) 863 1156 IPR011009 -
Dere12g0347 1228 Gene3D Ribonuclease Inhibitor 479 789 IPR032675 -
Dere12g0347 1228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1008 1020 IPR008271 GO:0004672|GO:0006468
Dere12g0347 1228 SMART LRR_typ_2 718 740 IPR003591 -
Dere12g0347 1228 SMART LRR_typ_2 501 525 IPR003591 -
Dere12g0347 1228 SMART LRR_typ_2 236 260 IPR003591 -
Dere12g0347 1228 SMART LRR_typ_2 429 452 IPR003591 -
Dere12g0347 1228 SMART LRR_typ_2 453 477 IPR003591 -
Dere12g0347 1228 SMART LRR_typ_2 573 597 IPR003591 -
Dere12g0347 1228 SMART LRR_typ_2 381 405 IPR003591 -
Dere12g0347 1228 SMART LRR_typ_2 669 693 IPR003591 -
Dere12g0347 1228 SMART LRR_typ_2 598 620 IPR003591 -
Dere12g0347 1228 SMART LRR_typ_2 621 645 IPR003591 -
Dere12g0347 1228 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 377 485 - -
Dere12g0347 1228 MobiDBLite consensus disorder prediction 1176 1202 - -
Dere12g0347 1228 Gene3D Ribonuclease Inhibitor 118 280 IPR032675 -
Dere12g0347 1228 SMART serkin_6 871 1156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0347 1228 Pfam Protein tyrosine and serine/threonine kinase 875 1155 IPR001245 GO:0004672|GO:0006468
Dere12g0347 1228 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 372 1156 - -
Dere12g0347 1228 ProSiteProfiles Protein kinase domain profile. 871 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0347 1228 SUPERFAMILY L domain-like 522 779 - -
Dere12g0347 1228 Pfam Leucine rich repeat N-terminal domain 120 162 IPR013210 -
Dere12g0347 1228 SUPERFAMILY RNI-like 295 609 - -
Dere12g0347 1228 ProSiteProfiles Leucine-rich repeat profile. 431 454 IPR001611 GO:0005515
Dere12g0347 1228 Gene3D Phosphorylase Kinase; domain 1 856 962 - -
Dere12g0347 1228 Pfam Leucine rich repeat 214 273 IPR001611 GO:0005515
Dere12g0347 1228 Pfam Leucine rich repeat 406 466 IPR001611 GO:0005515
Dere12g0347 1228 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 503 790 - -
Dere12g0347 1228 SMART LRR_sd22_2 718 743 - -
Dere12g0347 1228 SMART LRR_sd22_2 429 455 - -
Dere12g0347 1228 SMART LRR_sd22_2 573 594 - -
Dere12g0347 1228 SMART LRR_sd22_2 236 268 - -
Dere12g0347 1228 MobiDBLite consensus disorder prediction 1176 1191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0347 Dere-ChrDere12 5886006 5890919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0347 118 1175 Receptor kinase-like Gene Family AT5G56040 47.251 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere12g0347 PK_Tyr_Ser-Thr 2.8e-38 CL0016