Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0345 ATGCAAATTATAGGTGGTAATATAATTATGGAGGAAGAAAACGCTTTGGATGTTAAGTACGAAAGAGAGATCTGGCTTCAAGATAACCAAGACGATCTTTTTGGTGTGAATGATGCTTCTATGTTCTACCCTGATTTCCCTCCTCTCCCAGATTTCCCATGCATGTCATCCTCTTCGTCTTCTTCCTCAACTCCAGCACTTCCAGTCAAGACCACCACCTTCACGACGACATCTTCGCCATCCTCCACTGCCACTTCATCGTCGTCCTCCGCCGCATCATGGGCAGTCCTGAAGTCTGATGCCGAGAATTCTTTACCGATTGAGGATGCACCACCACCACCACTAGCAACCTTATCCTCCACCGCTTCCACGGAGATCCCGCGGCTGCCCAAAGACGGCCTTGAAGGCTTCGGCGGTTGTACAGACGCAATGGAGGAGCCTTTTCCGTACATGGACATGCTAGAGATAAACGATTTCTTCGACCCGGCATTAATTTTTCTAGATGAGGATTACCCATTAGAAGATTATGCTCAGAATCAGACGGAGCAGCAGGAGGAACATGCAGTTAAAGTGCTGCAGCAACCAGAGGATCAAGATAAACTTCTGATCTCTAATGTCAATAACAACGAAGAGATTCGAGAAAAGGGGGGAAGCCCAGATGTTGAAATGAGCGATGTGTTCTTGGAGTGGCTCAAGACGAACAAGGACAGTGTCTCGGCTACCGACTTGAGGAGCGTGAAGCTCAAAAAAGCAACCATAGAGTGTGCTGCTAAGCGTTTGGGTGGTGGAAAAGAAGCCATGAAGCAGTTGTTGAAGCTCATTCTTGAATGGGTTCAAACTAGTCATCTTCAGAACAAAAGGCGCAATAATAAGGAGAATAATAATAATGATAATAATAATAACAACAATAACAATAGTAGCGTTGTGCCTTCAAATTTCCTCACAAACCCTAGCCCTAATTCTAACCCAAATTCATTTGGAGTACCCCAGTCATCCCCTTGGATTTCTTCACTACATCCGTACAGGACAGATCCGGCAACTATTGTGACTGCACCACCACCACCACCCTTTCCAGTGATTGGGTATCCGGGTGACCCGTATTCGAATGGAGCTCCGAATGGTATCAACCCTTACCAACCAGCTGGAACGGAATATAACATGCTGGAAGCAGCTCATTCATGGCCGTCATCTCAGTTCCCTGTTGCACCCCACTACAACCATTCATTTGGGGACAGTAATCTTCAACAAGCTGGTCCACTTGCGGCGGCAGCCGGGGCGGGGTTTGGAGGTTATGGGAATCAGTATCCGTATCAGTATTTTCATGGCATGGCGATGGGTGATAAGATGAGGTTGGGTCCATTGGCGACCAAAGAGGCGAGGAAGAAAAGGATGGCGAGGCAGAGAAGGTATTTTTCTCATCATAGGAGCCACAAACACCATGGCCAAGTACAGAATCATGATGATAATGATCCACTTTCAAGATTGGGAAATGATCATAGTTGCACTGCCGGCACTGTAAATCCGGCCAATTGGGTGTACTGGGCATCACTGACCGGTGGGGCAGCTTCCTTGGGACCAGTGATTGCGGCGGAACCGCAGCCGGGACAGCTGGGGTTGGATCATCCGGCGGCCATGCAAACTCAGAATTATCATCAGGGTGCTGGAGTCTCATCAACAAATCATAGACGACAGGGATGGAAGCCAGAGAAGAACTTGAGGTTTCTTCTACAGAAGGTGTTGAAGCAAAGCGATGTTGGTAGCCTGGGGAGAATTGTGTTGCCAAAAAAAGAGGCAGAGACCCATTTACCAGAATTGGAGGCAAGAGACGGCATTTCCATAGCAATGGAAGACATTGGAACGTCTCGTGTTTGGAATATGCGCTATAGATACTGGCCAAACAATAAAAGCAGGATGTATCTGCTTGAGAATACTGGAGATTTCGTGAAAGCGAATGGACTCCAAGAGGGAGACTTCATTGTGTTATACTCAGATGTCAAGTGTGGCAAATTTTTGATAAGAGGAGTGAAAGTAAGGCAAGCAGCTGGGGCGAAAACAGAGACCAAGAAAGCAGGAAAATCGCAGAAAAACCAGCAGCTGCATGGGAATACCACCATTACAGCTGGTGCTGCCAATGATTCGCCATCTCCATTGTCACCCATCACTCACCCTCAGAAAAAACTGCGAAAAGAAGTAAAATAA 2199 0.4711 MQIIGGNIIMEEENALDVKYEREIWLQDNQDDLFGVNDASMFYPDFPPLPDFPCMSSSSSSSSTPALPVKTTTFTTTSSPSSTATSSSSSAASWAVLKSDAENSLPIEDAPPPPLATLSSTASTEIPRLPKDGLEGFGGCTDAMEEPFPYMDMLEINDFFDPALIFLDEDYPLEDYAQNQTEQQEEHAVKVLQQPEDQDKLLISNVNNNEEIREKGGSPDVEMSDVFLEWLKTNKDSVSATDLRSVKLKKATIECAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRNNKENNNNDNNNNNNNNSSVVPSNFLTNPSPNSNPNSFGVPQSSPWISSLHPYRTDPATIVTAPPPPPFPVIGYPGDPYSNGAPNGINPYQPAGTEYNMLEAAHSWPSSQFPVAPHYNHSFGDSNLQQAGPLAAAAGAGFGGYGNQYPYQYFHGMAMGDKMRLGPLATKEARKKRMARQRRYFSHHRSHKHHGQVQNHDDNDPLSRLGNDHSCTAGTVNPANWVYWASLTGGAASLGPVIAAEPQPGQLGLDHPAAMQTQNYHQGAGVSSTNHRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFLIRGVKVRQAAGAKTETKKAGKSQKNQQLHGNTTITAGAANDSPSPLSPITHPQKKLRKEVK 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0345 732 Pfam B3 DNA binding domain 577 672 IPR003340 GO:0003677
Dere12g0345 732 MobiDBLite consensus disorder prediction 471 492 - -
Dere12g0345 732 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 229 693 IPR044800 GO:0003700
Dere12g0345 732 SUPERFAMILY DNA-binding pseudobarrel domain 575 671 IPR015300 -
Dere12g0345 732 MobiDBLite consensus disorder prediction 55 89 - -
Dere12g0345 732 FunFam B3 domain-containing transcription factor FUS3 572 687 - -
Dere12g0345 732 MobiDBLite consensus disorder prediction 284 329 - -
Dere12g0345 732 SMART B3_2 576 676 IPR003340 GO:0003677
Dere12g0345 732 MobiDBLite consensus disorder prediction 694 720 - -
Dere12g0345 732 ProSiteProfiles B3 DNA-binding domain profile. 576 678 IPR003340 GO:0003677
Dere12g0345 732 MobiDBLite consensus disorder prediction 104 134 - -
Dere12g0345 732 Gene3D - 572 692 IPR015300 -
Dere12g0345 732 CDD BfiI_C_EcoRII_N_B3 574 675 - -
Dere12g0345 732 MobiDBLite consensus disorder prediction 682 732 - -
Dere12g0345 732 MobiDBLite consensus disorder prediction 294 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0345 Dere-ChrDere12 5854777 5857995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0345 398 696 B3 DNA Binding Superfamily AT3G24650 55.486 8.94e-94 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere12g0345 B3 4.7e-18 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0345 12 5854777 5857995 Dere12g0345 12 5854777 5857995 ECH