Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0344 ATGAGCAATGCTAACTTGAGTTATGCCGTCCGAAACCCAAACAAACTACTGAGATCTTCCGGATTTGTGGGACCCACAGATCACGCGGGCCGTTTCCTTCCTTCGTCACTCATCGCCAACTTCTTCATTTTGGCGCTTTCTTCTTCCCCTTCATTTGCTTCATTTTGGCCATCTCTCCCGATGTGCTCCTCCATGGACGATGAGGCAGCTTCGCTGCTTTCCAAGCTGATCCACATTGCCGACGAAATCTCTGACATCTACGACTTCAAACGCGTGATCAAGAAGCAATGCCGCCTTCTCCGCCACAGAATCAGGTTCTTGGCGTCTCTGTTCGAAGATTTGATGGAAATTAAGGATACAATTCCTGAAGAAGCAATCCTTGCTCTGCGTTCCTTGAGAGAAGCTTTGCAGAAGGCCAAGGAATTACTCGAGTTCGGTCGAACTGGAAGTCAAGTATACATGATATTGGAGAGAGAGCAAATTAAATGCAATTTTAGCAACCTTTTTGTTCATTTTGAACAAGCTATAAGCAAGATCTCCTGTTACAATCTTGATATATCTGACGAAGTTAAGGAGCAGGTTGCACTTGTTAATGATCAGTTCGTAAGAGCCAAGGACCGCTTTGATACATTTGGTCTAGAGCTATATGATTACTTGTTGTCCATGTACAACCAGAGCCATGATATGACCTCTGATCCAATTGTTCTACGTCTAATATGTGAAATGCTACAATTTATAAGTGTGGAAGATATCAAACAAGAGTCACTTGCTCTGCAGAAGATGGTTGTAGCCAAGGGCGGTGATCTGGAGAAAAGCATACAGGACATGTTAAAAGTGCTTAAAAAAATTGAAAATTTCATGCTGACAGAATCTTCAAATGTTGTTGCACCTGCTAGTGGGGATTTTCTTTCTCATGTTGATGAGTCATACAACAAACTGTGTCCTCAGTCACTGGTTATACCTGATGAATTTCGCTGTCCAATATCACTGGAATTGATGAAAGATCCTGTCATCATTTGCACAGGGCAGACTTATGAACGAGCTTGCATAAAGAAATGGTTTAAAGCAGGGCATGGAACATGTCCTAAGACACAGCAGATTCTTTCCAATACTATCCTCACACCTAACCATGTATTATATAGCCTGATATCCAGTTGGTGTGTGGCAAATGGGTTGGAATCACCTAAAAGATTAGGGAACTTATGCCTTTGTAAGGAAAAAGTTGATGGCTCGTCCAAATTTATAGAGGTTGATACTATACTGAGGAAACTTACTTCCAATGACATAGAAGATCAGCGGTTTGCTGCAGGTGAGCTTCGTCTTCTTACTAAGAACAATAGTCAAAATCGCATGTTGATTGCTGAGGCTGGTGCTATACCCCTACTTGCTGGTCTCCTTAATGTTCCCGACTCTCGGACCCAAGATCATGCAGTGACTGCTCTTCTGAATCTATCCATATTTGAGGGTAATAAAGAGTGTATTATGTCATCTGGGGCTGTTTCTGGGATCCTTCATGTGCTAAAAAATGGTAGTATGGAAGCTCGGGAAAATGCAGCAGCCACCCTTTTCAGTCTCTCTTTCATAAATGAGTACAAAGTGACTGTTGGCGCATCTGGGGCAATTCCAGCACTAGTTAAACTTTTGTACGAGGGCAGTCATAGAGGGAAGGTGGATGCTGCAGCAGCATTATTCAATATCTGTTTATATCAAGGGAACAAGAGACGTGCAGTTAGGGCTGGTATAGTGCCCAAGTTGATGGAAATGCTAACAGAACCTGGTGGAGAGATGATGGATGAGGCATTGGCAATTATGTCTGTACTAGCTAGCCACGCTGAAGGAAAAGCAGCAATTGGATCTTTAAATGCTGTGTCTACTTTGGTGAACTTACTTAAAAATGGATCTCCAAGGAACAGAGAGAATGCAACTGCAGTGCTGGCACACCTCTGTGTTGGAGATCCTCAACATCTGTCACTGGTCATGTCACATGGGGTGGTAAATTCTCTCTTGGAGCTGGCAGAATATGGCACCGAGAGGGGCAAGCGGAAAGCTTCTCAGCTGCTTGAGCTTGTGGGCAACTTTACAGAGAATTGTGAACATTCTAGGCAAACTGTCAGCTAG 2118 0.4334 MSNANLSYAVRNPNKLLRSSGFVGPTDHAGRFLPSSLIANFFILALSSSPSFASFWPSLPMCSSMDDEAASLLSKLIHIADEISDIYDFKRVIKKQCRLLRHRIRFLASLFEDLMEIKDTIPEEAILALRSLREALQKAKELLEFGRTGSQVYMILEREQIKCNFSNLFVHFEQAISKISCYNLDISDEVKEQVALVNDQFVRAKDRFDTFGLELYDYLLSMYNQSHDMTSDPIVLRLICEMLQFISVEDIKQESLALQKMVVAKGGDLEKSIQDMLKVLKKIENFMLTESSNVVAPASGDFLSHVDESYNKLCPQSLVIPDEFRCPISLELMKDPVIICTGQTYERACIKKWFKAGHGTCPKTQQILSNTILTPNHVLYSLISSWCVANGLESPKRLGNLCLCKEKVDGSSKFIEVDTILRKLTSNDIEDQRFAAGELRLLTKNNSQNRMLIAEAGAIPLLAGLLNVPDSRTQDHAVTALLNLSIFEGNKECIMSSGAVSGILHVLKNGSMEARENAAATLFSLSFINEYKVTVGASGAIPALVKLLYEGSHRGKVDAAAALFNICLYQGNKRRAVRAGIVPKLMEMLTEPGGEMMDEALAIMSVLASHAEGKAAIGSLNAVSTLVNLLKNGSPRNRENATAVLAHLCVGDPQHLSLVMSHGVVNSLLELAEYGTERGKRKASQLLELVGNFTENCEHSRQTVS 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0344 705 Gene3D - 68 182 IPR036537 GO:0007166
Dere12g0344 705 PANTHER U BOX DOMAIN-CONTAINING 94 690 - -
Dere12g0344 705 SMART Ubox_2 323 386 IPR003613 GO:0004842|GO:0016567
Dere12g0344 705 FunFam RING-type E3 ubiquitin transferase 319 393 - -
Dere12g0344 705 FunFam RING-type E3 ubiquitin transferase 69 182 - -
Dere12g0344 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 393 IPR013083 -
Dere12g0344 705 CDD MLKL_NTD 68 200 - -
Dere12g0344 705 SUPERFAMILY ARM repeat 417 689 IPR016024 -
Dere12g0344 705 FunFam RING-type E3 ubiquitin transferase 403 696 - -
Dere12g0344 705 Pfam Armadillo/beta-catenin-like repeat 446 485 IPR000225 GO:0005515
Dere12g0344 705 Pfam Armadillo/beta-catenin-like repeat 529 567 IPR000225 GO:0005515
Dere12g0344 705 Pfam Armadillo/beta-catenin-like repeat 612 649 IPR000225 GO:0005515
Dere12g0344 705 Gene3D - 411 704 IPR011989 -
Dere12g0344 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 457 499 IPR000225 GO:0005515
Dere12g0344 705 ProSiteProfiles U-box domain profile. 319 393 IPR003613 GO:0004842|GO:0016567
Dere12g0344 705 SUPERFAMILY RING/U-box 319 394 - -
Dere12g0344 705 Pfam U-box domain 320 389 IPR003613 GO:0004842|GO:0016567
Dere12g0344 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
Dere12g0344 705 CDD RING-Ubox_PUB 321 373 IPR045210 -
Dere12g0344 705 SMART arm_5 528 568 IPR000225 GO:0005515
Dere12g0344 705 SMART arm_5 610 650 IPR000225 GO:0005515
Dere12g0344 705 SMART arm_5 487 527 IPR000225 GO:0005515
Dere12g0344 705 SMART arm_5 569 609 IPR000225 GO:0005515
Dere12g0344 705 SMART arm_5 446 486 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0344 Dere-ChrDere12 5817535 5824363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0344 65 696 U-box Gene Family AT3G46510 51.654 0.0 646