Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0343 ATGGTTTTTTCTTCCATCCCAGCTTATCTTGATCCAGCCAACTGGCAACAACAGCAACCCAATCATCAGATTGGAAGTAGTAGTAGTGGCCCAAGTTCTCAGCTTCTTCCACCACCACCACTACCGCCCACTCAGTCTCACGGAGCCGTGGCCGGCGGCTCCGGCACCATCCGGCCAGGTTCGATGGCCGATAGAGCCCGGATGGCCAACATACCGTTGCCGGAGGTGGCACTGAAATGCCCACGGTGCGAATCCACCAACACCAAGTTTTGCTACTACAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGACCTGTAGAAGGTACTGGACCCGAGGTGGCGCCTTGAGAAACGTCCCGGTCGGCGGGGGATGCCGGAGAAACAAGAGGAGCAAAGGGAGCAGCTCAAAGTCACCGCCGGTGAGCTCCGATCGCCAGACGGGTAGTGCTAGTTCGACCAATTCGGTCTCCTCTAACAGTGGTTCTGCTGCCGATATAGTAGGCCTTTCACCTCAGGTTCCGCCGCTGAGGTTCATGGCTCCATTGCATCAACTAACTGAGTATGGAACCGGAGAGATGGGCTTGAACTATGGCCTGAGTAATTACAGCACAATTTCAGGTCCAATGGGAGGAGTAGGTGACCTAAATTTCCATATAGGAACCACCTTAGGCGGAGGAGCAAGTGGCGGCAGCTCGATCTTATCGGCCGCTGGGTTGGAGCAATGGCGGCTCCCGCAAACACAGCAGTTTCCCTTCTTGGCTGGTTTGGAAGCTTCACCTGAATTGTACCCATTTGAAGGTGGAACCGACGCGCCTGGATATGGCGGCGGCGGCGGGGCGAGTCAACTCCGACCTAAAGTGTCGACTTCTGGCGTGATAACTCAACTAGCTTCAGTGAAAATGGAAGATCATAGTCATCGGGAACTGAACTTGTCAAGGCACTTCTTGGGGATAAATAATAATCCAACAAATCAGGAGCAGTATTGGAATACTACTACTGGTAATTCTACTGCAGCTAATTGGACTGATCTTTCTGGTTTTAGCTCTTCTTCCACTACTAGCAACAATCCACTATAG 1083 0.5272 MVFSSIPAYLDPANWQQQQPNHQIGSSSSGPSSQLLPPPPLPPTQSHGAVAGGSGTIRPGSMADRARMANIPLPEVALKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQTGSASSTNSVSSNSGSAADIVGLSPQVPPLRFMAPLHQLTEYGTGEMGLNYGLSNYSTISGPMGGVGDLNFHIGTTLGGGASGGSSILSAAGLEQWRLPQTQQFPFLAGLEASPELYPFEGGTDAPGYGGGGGASQLRPKVSTSGVITQLASVKMEDHSHRELNLSRHFLGINNNPTNQEQYWNTTTGNSTAANWTDLSGFSSSSTTSNNPL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0343 360 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Dere12g0343 360 MobiDBLite consensus disorder prediction 16 61 - -
Dere12g0343 360 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 54 174 IPR045174 GO:0003700|GO:0006355
Dere12g0343 360 MobiDBLite consensus disorder prediction 122 165 - -
Dere12g0343 360 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Dere12g0343 360 Pfam Dof domain, zinc finger 77 132 IPR003851 GO:0003677|GO:0006355
Dere12g0343 360 MobiDBLite consensus disorder prediction 16 32 - -
Dere12g0343 360 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0343 Dere-ChrDere12 5801908 5803250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0343 1 332 C2C2-Dof Transcription Factor Family AT5G02460 41.146 7.70e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere12g0343 zf-Dof 1.2e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0343 12 5801908 5803250 Dere11g0426 11 7101763 7103049 CCT
Dere12g0343 12 5801908 5803250 Dere12g0343 12 5801908 5803250 ECH