Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0342 ATGCTGCAGTATCATACCTCCTCCTTCGTCGTTCTGAACACCATCTCCGTGGCAAACTGCATCAGATTGTTTTCCCCCACCATGGATTTCACCTACATGGGGAGCCCCGCCAATGGGGGCTCTGCTCAGGAATCATTCCCTTCTAGCTTTACCAAATTCAACTCCGCTCTCACTGCTGGGCTGTTGAATCCGATGTCACCACCGCCCCCTCCCGATAAAACTGGATCAAGCCCCACCCTTTTTGAAATGATGGCCAGTGAGCCCGATATTCATCCCAGAACTCAGATCCCACCCAACAATATCGCTGTCTCCGCACAAAAGCCCCAAATTCTCGTGCAGGATCGGCAGGCTCTTATGATGCAACGAATTTCCGACTTACTGGCCACTCGCAGCCCCGGTAACCAGTTCAACGATCCATCATCCAGTGATATCAAGCTCACGCTCAGTTCCAAAGATGGAATTAGCATCTCCGTGAATGTTCACCGACAAATTCTTGCTGCCCATAGCAGATTCTTCTCAGTCAAGCTCTCTGATCACTGGGCAAAGCAGGAGCGGCAGACACTGCCCCACATTGTTGGAATAGCTGACTGTGATGACGTTGAAATCTATATTGAAACGTTGAGGTTGATGTACTGTAAGGATATTAGGAAGAAGCTGATGAAGGAGGATGTTTCCAGAGTTCTTGGTATCTTGAAGGTTTCGGCGGCCATTGGATTTGATGCTGGGGTTTTATCTTGTTTGGAGTACTTGGAAGCAGCCCCATGGGCAGAGGACGAAGAAGAGAAAGTGGCCTCACTTCTATCCGAGCTTCGTCTTGAAGCTGCTGGGGAAGTTTTGAAGAGGGTTTCAACTGAAGTTACCAATGTAAATGAAGAGGGAAACGATAATGAGGAAGTTCTGCTAAAACTTATTCGTGTGGTTCTTGAAGGCAAAGATGAGAAGGCCAAGCGTGAGATGAAAGGGTTAGTGTCCAAGATGCTCCGTGAGAATTCATCTCAAAATGATCTTCGCAAGGAGTCCTTATACTCTGCTTGTGATGATTGTCTGCAACTGCTTAGTCAACACTTTTTGCAGGCTGCTGCTTCAGACTTGGAGGATGTTGGTCAAATTGCACGACAAGCAGATAATTTGCATTGGATTTTGGATATTTTAATTGATAGACAGATTGCTGAGGATTTCCTGAAAACGTGGGCATCACAATCTGAATTATCTGAAGCACATTCTAAAGTTCCTGCAGTTCATCGTTTTGAGGTTAGCAGAGTTACAGCAAGGTTGTTTGTTGGGATTGGGAAGGGACAAATGTTGGCTTCTAAAGATGTCAGGTGTTTACTTCTAAAAACCTGGTTGGTGCCATTCTATGATGATTTTGGTTGGATGAGGAGGGCATCCAAAGGCCTCGACCGCCACCTAATTGAAGATGGCCTTTGTAACACTATCCTCACTCTGCCACTCTGCTGGCAACAGGAAATCTTGCTTGCTTGGTTTAACCATTTCTTGAATTCTGGCGAAGACTGCCCAAATATACAAAAAGGCTTTGAAATTTGGTGGAGAAGGGCTTTCTGGAAGCGGAATGGAGAGCAAGAACGGACACGATATCTACGAATCACAACTGCTACAATAGACAACCCTTGA 1632 0.4614 MLQYHTSSFVVLNTISVANCIRLFSPTMDFTYMGSPANGGSAQESFPSSFTKFNSALTAGLLNPMSPPPPPDKTGSSPTLFEMMASEPDIHPRTQIPPNNIAVSAQKPQILVQDRQALMMQRISDLLATRSPGNQFNDPSSSDIKLTLSSKDGISISVNVHRQILAAHSRFFSVKLSDHWAKQERQTLPHIVGIADCDDVEIYIETLRLMYCKDIRKKLMKEDVSRVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLSELRLEAAGEVLKRVSTEVTNVNEEGNDNEEVLLKLIRVVLEGKDEKAKREMKGLVSKMLRENSSQNDLRKESLYSACDDCLQLLSQHFLQAAASDLEDVGQIARQADNLHWILDILIDRQIAEDFLKTWASQSELSEAHSKVPAVHRFEVSRVTARLFVGIGKGQMLASKDVRCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLCNTILTLPLCWQQEILLAWFNHFLNSGEDCPNIQKGFEIWWRRAFWKRNGEQERTRYLRITTATIDNP 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0342 543 SUPERFAMILY POZ domain 132 250 IPR011333 -
Dere12g0342 543 Gene3D Potassium Channel Kv1.1; Chain A 118 253 IPR011333 -
Dere12g0342 543 Pfam BTB/POZ domain 135 226 IPR000210 GO:0005515
Dere12g0342 543 ProSiteProfiles BTB domain profile. 142 219 IPR000210 GO:0005515
Dere12g0342 543 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 121 528 IPR038920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0342 Dere-ChrDere12 5787893 5790986 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere12g0342 BTB 0.0003 CL0033