Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0323 ATGGCTGAGGCGAAATCAGAGGAGTGTTGTCTAGAGAATAAGCAATCTGCTGCTGCTTCTACCTCCTCTGTATCTGAAGGCAGTGCTAGTGCCAGTGCCATACACAAATCCCCAGAACGATGTAGCCCAGCATCAACATCACCTTCTCATCGGAGGACCACTGGCCCCATAAGGCGTGCAAAGGGTGGTTGGACAGCACAGGAGGATGAGACATTAAGAAATGCTGTTGAAGCTTTTAAGGGCAAGAGTTGGAAGAAAATAGCTGAATTTTTTCCCGATAGATCAGAAGTGCAATGTCTGCACAGATGGCAAAAGGTTCTTAATCCAGAACTTGTTAAAGGGCCTTGGACTCAAGAGGAGGATGACAAAATTGTTGAATTGGTGTCAAAATATGGGCCAACCAAATGGTCTTTGATAGCCAAGTCTTTGCCTGGTCGCATAGGGAAACAGTGTCGAGAGCGATGGCACAATCATCTTAATCCTGAAATAAAGAAGGATGCCTGGACTTTGGAGGAAGAATTGGCCCTCATGAATGCCCATCGCATAAATGGGAACAAATGGGCTGAAATAGCTAAGGTTTTACCAGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCATTAAAGAAAAAGTTGGAATTTTATTTAGCTACAGGAAACCTTCCACCAGTCCCAAAGAACAGTCCACAAAGTGGTGTGAAAGAAACAATAAGACGCTCTGCAACTAAAACAATACTTGTTTGTTCAAATAAAGGATTAGATGCAGCTGCTGAAACATCTTCGGAAACTACAGACACTACTAAACAGGATGAGAGTGGAAAGAATCATTTAGAGTCCTCGGCAACAGTGAGAGAGGTTGGTAATTCTCTGAGTGTTCCTGCAAATGAATCTGCTGATTCTGGCTTTGTAGAATGGAAACCCAGATCAACCAATGGGAATTTCAGCTGCAGCAACTCAGATCCAGTGTCAAGGGATAATTTTGGAATGACCAGTGACCTAAAATTTGAGAACTCTGGACTTAATGGCAAGCAAACAACTGGGAATTGTGTGAATAATGGTAAAATGTGCAGTGGCAGGTTAATCTGTACATCTTTTTCACAGGATAGTCCATCTTCTGGTTCTTTGTGTTATGAGCCACCGCAGTTGGAGAGTTCTGCTCCTTTAGATTCCCTTTATTTAAGCATGTATTGCCTGCAGAACGAGTACAACTCTACTCCAGTAATGTCACCTGTTGGTTTCTTCACTCCACCTTGTGTGAAGGGCAGTGACTTATGCAGAGAAACTCCTGAATCAATATTGAAAATGGCTGCTAAAACTTTCCCGTATACTCCTTCAATATTGAGGAAGAGAAGGGCTGGAATCCAAGCACAGGTAACTCCTTCTAAAGTTGTGAAAATAGACAATGGATTTCATACTTCTAATGAACAGGAGGGAACCAAGGATAGTTCTGGTTCTGGGTGTGGGAAACTCTGTGAGAGTCCAGCAAGCAATGACATTCCCAATAATATGGCTTTCAATGCTTCTCCTCCATATCGATTAAGATTCAGACGAACAGCAATTGTCAAGTCTGTGGAGAAACAACTTCAGTTTGCATTTGATAAAGAGAAGCATGATGGCAACAAAATGGAAAAATCTACAAGGAGGGGCACTGCAATGACTGAAGATTGTTTACCTGAAACAAAATTGGGAGTGACCTAG 1704 0.4231 MAEAKSEECCLENKQSAAASTSSVSEGSASASAIHKSPERCSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVEAFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPEIKKDAWTLEEELALMNAHRINGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLEFYLATGNLPPVPKNSPQSGVKETIRRSATKTILVCSNKGLDAAAETSSETTDTTKQDESGKNHLESSATVREVGNSLSVPANESADSGFVEWKPRSTNGNFSCSNSDPVSRDNFGMTSDLKFENSGLNGKQTTGNCVNNGKMCSGRLICTSFSQDSPSSGSLCYEPPQLESSAPLDSLYLSMYCLQNEYNSTPVMSPVGFFTPPCVKGSDLCRETPESILKMAAKTFPYTPSILRKRRAGIQAQVTPSKVVKIDNGFHTSNEQEGTKDSSGSGCGKLCESPASNDIPNNMAFNASPPYRLRFRRTAIVKSVEKQLQFAFDKEKHDGNKMEKSTRRGTAMTEDCLPETKLGVT 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0323 567 CDD SANT 115 159 IPR001005 -
Dere12g0323 567 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 214 IPR017930 -
Dere12g0323 567 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 107 IPR017930 -
Dere12g0323 567 Pfam Myb-like DNA-binding domain 165 208 IPR001005 -
Dere12g0323 567 Pfam Myb-like DNA-binding domain 113 159 IPR001005 -
Dere12g0323 567 Pfam Myb-like DNA-binding domain 61 107 IPR001005 -
Dere12g0323 567 ProSiteProfiles Myb-like domain profile. 56 107 IPR001005 -
Dere12g0323 567 MobiDBLite consensus disorder prediction 1 68 - -
Dere12g0323 567 MobiDBLite consensus disorder prediction 258 283 - -
Dere12g0323 567 Gene3D - 113 164 - -
Dere12g0323 567 PANTHER MYB PROTEIN-RELATED 61 132 - -
Dere12g0323 567 MobiDBLite consensus disorder prediction 13 32 - -
Dere12g0323 567 FunFam Transcriptional activator Myb isoform A 113 165 - -
Dere12g0323 567 MobiDBLite consensus disorder prediction 266 280 - -
Dere12g0323 567 CDD SANT 64 107 IPR001005 -
Dere12g0323 567 FunFam Transcriptional activator Myb isoform A 60 112 - -
Dere12g0323 567 SMART sant 112 161 IPR001005 -
Dere12g0323 567 SMART sant 164 212 IPR001005 -
Dere12g0323 567 SMART sant 60 109 IPR001005 -
Dere12g0323 567 ProSiteProfiles Myb-like domain profile. 108 159 IPR001005 -
Dere12g0323 567 CDD SANT 167 210 IPR001005 -
Dere12g0323 567 ProSiteProfiles Myb-like domain profile. 160 210 IPR001005 -
Dere12g0323 567 Gene3D - 60 112 - -
Dere12g0323 567 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 163 IPR017930 -
Dere12g0323 567 MobiDBLite consensus disorder prediction 538 552 - -
Dere12g0323 567 Gene3D - 166 242 - -
Dere12g0323 567 SUPERFAMILY Homeodomain-like 110 206 IPR009057 -
Dere12g0323 567 MobiDBLite consensus disorder prediction 39 53 - -
Dere12g0323 567 FunFam Transcription factor MYB3R-2 166 231 - -
Dere12g0323 567 MobiDBLite consensus disorder prediction 538 567 - -
Dere12g0323 567 SUPERFAMILY Homeodomain-like 62 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0323 Dere-ChrDere12 5608815 5612897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0323 2 557 MYB Transcription Factor Family AT3G09370 47.788 1.86e-151 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere12g0323 Myb_DNA-binding 1.1e-13 CL0123