Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0319 ATGAAGGAGAGGCAACGTTGGAGAGCTGAAGAGGACGCCTTACTACGTGCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTGTCCCAGCGTATGAACACACCCCTTAACCGGGATGCTAAGTCGTGCTTAGAAAGGTGGAAGAACTACCTGAAGCCTGGCATCAAGAAGGGATCTCTTACCGAAGAAGAACAACGACTTGTCATCCGTCTTCAAGCGAAACATGGCAACAAATGGAAGAAAATTGCTGCAGAAGTCCCGGGTCGCACTGCTAAGAGGTTAGGCAAGTGGTGGGAAGTATTCAAAGAGAAGCAGCAGAGGGAGAAAAAGGAGAACAACAAAACAGTTGACCCAATTGACGACACCAAGTACGATCATATACTTGAGACTTTTGCTGAGAAGCTGGTGAAAGAACGCCCTTCCCCATCCTACCTCATGGCTGCTTCCAATGGAGCCTTTATTCACACAGATGCACCAGCTCCTGCATCAGCTATGCTTCCTCCATGGCTTTCAAATTCTAATAGCACCACAGCTATTAGGCCACCTTCCCCTTCTGTGACACTAAGCCTCTCTCCCTCAACTGTGGCTGCACCACCTCCATTTCAGTGGTTACAACCTGACAGACCACCAGAGAATGCTCCTCTTGTTATGGGGAATGTAGCACCTCATGGAACTATTCCAGCTTTTGGTGATAACATGCTTGTATCTGAGCTGGTTGAGTGCTGTAAAGAATTGGAAGAAGGCCACCGGGCATGGTCATCACATAGGAAGGAAGCCGTGTGGAGGTTAAGGCGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCCTGTCGGAGACGGGAGAAGATGGAAGAGATTGAAGCGAAGATTAAAGCTCTCCGGGAAGAACAGAAGGCTGCTATGGACAGAATCGAAGCTGAATACCGGGAGCAGCTAGCTGGACTGAGAAGAGATGCAGAAACCAAGGAGCAGAAATTGGCTGAGCAATGGGCTGCAAAGCACTTAAGGCTTAGTAAGTTTCTAGAGCAGATAGGGTGCAGACCCAGGCTTGCAGAGCCAAATGGGAGATGA 1074 0.4898 MKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKENNKTVDPIDDTKYDHILETFAEKLVKERPSPSYLMAASNGAFIHTDAPAPASAMLPPWLSNSNSTTAIRPPSPSVTLSLSPSTVAAPPPFQWLQPDRPPENAPLVMGNVAPHGTIPAFGDNMLVSELVECCKELEEGHRAWSSHRKEAVWRLRRVELQLESEKACRRREKMEEIEAKIKALREEQKAAMDRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHLRLSKFLEQIGCRPRLAEPNGR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0319 357 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Dere12g0319 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Dere12g0319 357 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Dere12g0319 357 Pfam Myb-like DNA-binding domain 7 68 - -
Dere12g0319 357 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Dere12g0319 357 CDD SANT 6 53 IPR001005 -
Dere12g0319 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Dere12g0319 357 SMART sant 3 55 IPR001005 -
Dere12g0319 357 SMART sant 58 106 IPR001005 -
Dere12g0319 357 Coils Coil 284 326 - -
Dere12g0319 357 FunFam MYB-related transcription factor 4 58 - -
Dere12g0319 357 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 352 - -
Dere12g0319 357 Gene3D - 62 122 - -
Dere12g0319 357 CDD SANT 63 104 IPR001005 -
Dere12g0319 357 Gene3D - 4 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0319 Dere-ChrDere12 5537540 5538613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0319 1 348 MYB Transcription Factor Family AT2G37630 69.041 1.38e-172 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere12g0319 Myb_DNA-bind_6 2.4e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0319 12 5537540 5538613 Dere12g0319 12 5537540 5538613 ECH