Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0318 ATGGATCTCCCTAATAAGTCGGCTGTCATTGTACGAAAATTCAACAGATCCCTCGCCTCATCCAAACCCAAATCATCAAAAGTTGGAAAAGGTTCTTCAATCTTCGCTACTCAGTGCGCAATCACTAGGATCTGCCTCAGCCAAAGTTTGATTTTGTTGATGGGTGCATGCTGGAGCAATCGGATTAAGGCCGTGAGTCCTTCCAGTACAGGGTTTACTTCAAGAAGTGTGAGCAGGGATGGCTGTGATACGAGCTCAAACAGCAGGAACTCATCGTCCTCCATACCCATAACTCCTCGGAGTGAGGGTGAGATCTTACAATCTTCCAATTTGAAGAAATTCAACTACAGTGAACTTAAAACAGCCACAAGAAATTTCCGCCCTGATAGTATCTTAGGAGAGGGTGGATTTGGTTCAGTTTTCAAGGGGTGGGTTGATGAGCATTCCCTTGTTGCTACCAGGCCAGGAACAGGCATTGTTATTGCTGTGAAGAGGCTTAAACTAGATGGCTTCCAGGGTCACAAGGAATGGCTGGCTGAAATCAACTACCTTGGTCGACTGCATCATCCTAATCTTGTCAAATTGATGGGGTATTGCTTGGAGGATGAGCATCGGCTTCTAGCTTATGAATTTATGTCTAAGGGCAGTGTGGAGAATCATCTGTTCAGAAGAGGCACTCATTTTCAGCCGTTCTCTTGGAGTTTGCGAATGAAAATAGCCCTCGGGGCTGCCAAGGGTCTTGCATTTCTCCATAGTACAGAACCTAAAGTCATATACCGTGACTTCAAGACTTCTAATATTCTTCTTGATTCTAATTATAATGCCAAACTTTCTGACTTTGGGTTGGCCAGAGACGGGCCTACTGGTGACAAGAGCCATGTCTCAACTAGGGTCATGGGAACCCATGGATATGCTGCTCCAGAGTATCTTGCAACAGGCCACCTCACTGCAAAGAGTGATGTGTATAGTTTTGGAGTAGTTCTTCTGGAAATGTTATCTGGAAGACGAGCCATAGACAAAAACCGGCCATCTGGAGAACATAACCTTGTAGATTGGGCAAAACCTTACCTATCTAATAGACGTAGATCTTTTCGTGTCATGGATACCCGTATTGAAGGTCAGTATCCCCTGAGTCGAGCTCAAAAGGCGGCAGCCCTTGCTTTTCAGTGTCTTTCAGCAGAACCTAAATTCAGGCCAACCATGGATGAGGTAGTAAGGCAATTGGAGCAGCTTCAGGAATCAAAGGACATGCTAAAAGGTGCCGATAAGAAAGAGCATTGCATACAAGGCCCCGGCCGTAGCCGTCCCAAGGGCTTCCCTGCATCCACAAAAGACAGTGCAAGAAGTGCTCCAACAAAGGCCACTTATCCGAGGCCATCTGTGTCTCCGCTTTTTGCTTAA 1401 0.4604 MDLPNKSAVIVRKFNRSLASSKPKSSKVGKGSSIFATQCAITRICLSQSLILLMGACWSNRIKAVSPSSTGFTSRSVSRDGCDTSSNSRNSSSSIPITPRSEGEILQSSNLKKFNYSELKTATRNFRPDSILGEGGFGSVFKGWVDEHSLVATRPGTGIVIAVKRLKLDGFQGHKEWLAEINYLGRLHHPNLVKLMGYCLEDEHRLLAYEFMSKGSVENHLFRRGTHFQPFSWSLRMKIALGAAKGLAFLHSTEPKVIYRDFKTSNILLDSNYNAKLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAIDKNRPSGEHNLVDWAKPYLSNRRRSFRVMDTRIEGQYPLSRAQKAAALAFQCLSAEPKFRPTMDEVVRQLEQLQESKDMLKGADKKEHCIQGPGRSRPKGFPASTKDSARSAPTKATYPRPSVSPLFA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0318 466 Pfam Protein kinase domain 129 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0318 466 ProSiteProfiles Protein kinase domain profile. 126 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0318 466 MobiDBLite consensus disorder prediction 417 431 - -
Dere12g0318 466 MobiDBLite consensus disorder prediction 66 100 - -
Dere12g0318 466 PANTHER OS01G0588500 PROTEIN-RELATED 86 412 - -
Dere12g0318 466 CDD STKc_IRAK 132 411 - -
Dere12g0318 466 Gene3D Transferase(Phosphotransferase) domain 1 212 430 - -
Dere12g0318 466 ProSitePatterns Protein kinases ATP-binding region signature. 132 164 IPR017441 GO:0005524
Dere12g0318 466 Gene3D Phosphorylase Kinase; domain 1 101 211 - -
Dere12g0318 466 FunFam Probable serine/threonine-protein kinase PBL8 212 427 - -
Dere12g0318 466 MobiDBLite consensus disorder prediction 417 466 - -
Dere12g0318 466 FunFam Serine/threonine-protein kinase BIK1 92 211 - -
Dere12g0318 466 SUPERFAMILY Protein kinase-like (PK-like) 91 408 IPR011009 -
Dere12g0318 466 Coils Coil 401 421 - -
Dere12g0318 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0318 Dere-ChrDere12 5516951 5521054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0318 104 416 Glycoside Hydrolase AT3G07070 50.000 3.09e-106 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere12g0318 Pkinase 7e-46 CL0016