Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0317 ATGGAGACAATACCCCTCTCCCTCTTCCTCCTTCTTCCCACATTCTCCCCTTCAACCAACCAATCTTCTCCTTCATTCTCTCTTTCTCTCTCTACTTCAATGGCTTCAATAATGTCCCTGCTCTGCATTGCCTTATTGACCTCTCTTTTTGTAGCAACCACTGCTAGAATCCCCGGATTTTACACCGGCGGCGCCTGGCAGAGCGCCCACGCCACCTTCTATGGCGGCAGTGACGCTTCTGGAACAATGGGTGGTGCTTGCGGCTATGGAAATCTGTATAGCCAAGGCTATGGAGTGAACACTGCAGCTTTAAGCACGGCTCTATTCAACAATGGCCTGAGCTGCGGGGCGTGCTTCGAGATCAAGTGCGACCAAGACCCCAGATGGTGCAACCCAGGAAGCCCTTCCATCATCGTCACTGCCACCAACTTCTGCCCTCCCAACTTCGCTCTTCCCAGCGACAATGGCGGATGGTGTAACCCCCCTCGTCCCCACTTTGACCTCGCCATGCCCATGTTCCTCAAGATCGCTCAGTACCGTGCCGGAATTGTCCCCGTCGCCTACCGCCGGGTGCCATGCAGGAAGATAGGGGGAATCAGATTCACAGTCAACGGTTTCCGTTACTTCAACTTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGCGCGTGAGCTTGAAGGGAAGCAAGACCGGTTGGATGAGCATGAGCAGGAACTGGGGGCAAAATTGGCAATCCAACGCGGTTCTGGTGGGCCAGGCCCTCTCCTTTAGACTCACCGGCAGTGACAGACGGACATCCACCTCGTGGAACGTGGCACCACCTAATTGGCAGTTCGGTCAAACCTTCACGGGCAAGAATTTCCGCGTCTAA 879 0.5484 METIPLSLFLLLPTFSPSTNQSSPSFSLSLSTSMASIMSLLCIALLTSLFVATTARIPGFYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCDQDPRWCNPGSPSIIVTATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKIGGIRFTVNGFRYFNLVLITNVAGAGDIVRVSLKGSKTGWMSMSRNWGQNWQSNAVLVGQALSFRLTGSDRRTSTSWNVAPPNWQFGQTFTGKNFRV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0317 292 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 84 198 IPR007112 -
Dere12g0317 292 PANTHER EXPANSIN-A15 45 290 IPR002963 GO:0009664
Dere12g0317 292 Pfam Expansin C-terminal domain 199 276 IPR007117 -
Dere12g0317 292 SMART dpbb_1 101 188 IPR007112 -
Dere12g0317 292 SUPERFAMILY PHL pollen allergen 197 287 IPR036749 -
Dere12g0317 292 SUPERFAMILY Barwin-like endoglucanases 65 216 IPR036908 -
Dere12g0317 292 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Dere12g0317 292 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Dere12g0317 292 PRINTS Expansin/Lol pI family signature 273 287 IPR007118 GO:0005576
Dere12g0317 292 PRINTS Expansin/Lol pI family signature 105 123 IPR007118 GO:0005576
Dere12g0317 292 PRINTS Expansin/Lol pI family signature 181 197 IPR007118 GO:0005576
Dere12g0317 292 PRINTS Expansin/Lol pI family signature 65 80 IPR007118 GO:0005576
Dere12g0317 292 Gene3D - 53 194 IPR036908 -
Dere12g0317 292 FunFam Expansin 198 290 - -
Dere12g0317 292 FunFam Expansin 55 194 - -
Dere12g0317 292 Pfam Lytic transglycolase 101 188 IPR009009 -
Dere12g0317 292 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 208 287 IPR007117 -
Dere12g0317 292 Gene3D - 198 290 IPR036749 -
Dere12g0317 292 PRINTS Expansin signature 156 173 IPR002963 GO:0009664
Dere12g0317 292 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Dere12g0317 292 PRINTS Expansin signature 96 110 IPR002963 GO:0009664
Dere12g0317 292 PRINTS Expansin signature 123 134 IPR002963 GO:0009664
Dere12g0317 292 PRINTS Expansin signature 244 265 IPR002963 GO:0009664
Dere12g0317 292 PRINTS Expansin signature 273 289 IPR002963 GO:0009664
Dere12g0317 292 PRINTS Expansin signature 173 186 IPR002963 GO:0009664
Dere12g0317 292 PRINTS Expansin signature 137 147 IPR002963 GO:0009664
Dere12g0317 292 PRINTS Expansin signature 197 209 IPR002963 GO:0009664
Dere12g0317 292 CDD DPBB_EXPA_N 66 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0317 Dere-ChrDere12 5506750 5509743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0317 38 292 Expansin Gene Family AT2G39700 82.879 1.20e-162 451