Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0296 ATGGCTTTAGTGGGATCTTCCTATTGGTGCTACAGATGCAATCAGTTCGTTAGGGTTCGTGTTGGGACTGAAGACTCTTTACTTTGCCCTGATTGTGGGTCTGGTTTTATAGAGGAAATCAGAACTCGTACTAACTCTCCCTTCCATCGATTCCCTTCACCGGCAATGTACGTCGATGATCAGTCTAGCTCTGAGCAAGGTGCCAGCCCAAGACTCCGCCTTGGCCGGCGGAACGCCGGCGATCGGTCCCCTTTTAACCCTGTTATCGTCCTCAGTGGACCTGCCGATGGCGGTGGCGGCGGTGGAAATGAAGGGATTGGCGTTGATAGGGGTAATTTCGAACTTTATTACAACGAAGGCACCGGTTCGGGTCTTCGGCCTCTTCCAGCGAGTGTCACAGAGTTCTTAATGGGTGCTGGATTCGACCACCTTCTTGACCAGTTGTCTCAATTAGAAGTTACCGGAGTCGGACGATTACATCAACCCCCGGCATCGAAAGCTGCAATCGAATCGATGCCCATCATCAAGATTGTTGCCACACATGTTTCCGCGGAATCACATTGTGCAGTTTGTAAGGAACCCTTCGAGCTTGACTCGGACGCTCGTGAAATGCCTTGTAAGCACATTTACCATTCTGATTGTATCCTTCCATGGCTTTCAATTCGTAATTCCTGTCCGGTTTGTCGCCATGAGTTACCGACTGAGCTGCGTGGGAGTAGTAGTGGAAGAAACTCCCCTGTGTCTGATGGAGGAAGGGATGATCATACTGTGGGATTAACTATATGGAGACTGCCTGGTGGTGGTTTCGCTGTAGGGAGGTTCACTGGGGGAAGAAGAGCCGCAGAACGTGAACTTCCCGTTGTATATACAGAAATGGATGGTGCGTTCAATAATGTGGGTGTTCCAAGGAGGATATCTTGGGAAACGAGTGTAAGAAGATCAAGGGAGACTCGGGGGTTAGGTAGCGCTGTCCGGAACTTCTTCTCATACTTCAGGGGGCTTAGGGCCTCCTTCTCTCGTTCTTCCATTACTGATTCAGATCCGAGCCGAAGAACTCGATCAAATGCAGTATTCTCTAGATTCTCCAGGAGACGCAACTAG 1101 0.5005 MALVGSSYWCYRCNQFVRVRVGTEDSLLCPDCGSGFIEEIRTRTNSPFHRFPSPAMYVDDQSSSEQGASPRLRLGRRNAGDRSPFNPVIVLSGPADGGGGGGNEGIGVDRGNFELYYNEGTGSGLRPLPASVTEFLMGAGFDHLLDQLSQLEVTGVGRLHQPPASKAAIESMPIIKIVATHVSAESHCAVCKEPFELDSDAREMPCKHIYHSDCILPWLSIRNSCPVCRHELPTELRGSSSGRNSPVSDGGRDDHTVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVYTEMDGAFNNVGVPRRISWETSVRRSRETRGLGSAVRNFFSYFRGLRASFSRSSITDSDPSRRTRSNAVFSRFSRRRN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0296 366 SMART ring_2 188 228 IPR001841 -
Dere12g0296 366 SUPERFAMILY RING/U-box 168 235 - -
Dere12g0296 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Dere12g0296 366 CDD RING-H2_RNF126-like 188 229 - -
Dere12g0296 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 233 - -
Dere12g0296 366 FunFam E3 ubiquitin-protein ligase RING1-like 150 235 - -
Dere12g0296 366 Pfam Ring finger domain 187 229 IPR001841 -
Dere12g0296 366 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Dere12g0296 366 Pfam Protein of unknown function (DUF1117) 257 363 IPR010543 -
Dere12g0296 366 MobiDBLite consensus disorder prediction 56 81 - -
Dere12g0296 366 Pfam zinc-ribbon 7 40 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0296 Dere-ChrDere12 5025791 5026891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0296 127 243 C3H Transcription Factor Family AT5G01980 42.735 3.29e-27 110