Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0283 ATGGACTTTAATCCTCAAAACACTAAGAAATTATCAGATCAGATAAGATGGATCTCAGATGATTCTGGACAAGCCAGATCGTACACTTGTGCCTTTTGCAAGAGAGGATTCTCAAATGCTCAAGCCCTAGGAGGTCACATGAACATCCATAGAAGAGACAGAGCGAAGCTCAAGCAATTATCTTCTGAAGAAAACTTGCTTTCTCGGGACATCTATGTCACTTCCACTTCTGATGATGATCACCAGCTTCATCATGATCAAAAGCCCTCTAACTTGGAAGAGAAAGTTCTGTTTCAGTTGGATTCTGGAGAAGATAAAGTTTACACTAACAATCATAAACAGGTAATCAATATCAATGTTTCTTCTGCAAAAGTACTTCCCAAGATTCCCTTTCTTGCTAAGATTAATGAGGAGACGAAGATAGAAATAGATCTTGAGCTTCGTTTAGGTCCTGAGCCACATGAGGCTTCAACTTTGAGCACCAGAGAGAATTTTTGA 498 0.3936 MDFNPQNTKKLSDQIRWISDDSGQARSYTCAFCKRGFSNAQALGGHMNIHRRDRAKLKQLSSEENLLSRDIYVTSTSDDDHQLHHDQKPSNLEEKVLFQLDSGEDKVYTNNHKQVININVSSAKVLPKIPFLAKINEETKIEIDLELRLGPEPHEASTLSTRENF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0283 165 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Dere12g0283 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Dere12g0283 165 PANTHER OS07G0101800 PROTEIN 25 153 - -
Dere12g0283 165 Gene3D Classic Zinc Finger 7 86 - -
Dere12g0283 165 SUPERFAMILY beta-beta-alpha zinc fingers 26 54 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0283 Dere-ChrDere12 4773261 4773758 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0283 4 150 C2H2 Transcription Factor Family AT3G09290 37.931 2.38e-22 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere12g0283 None None None