Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0277 ATGTCCATTCTCGTTTTGGACAATCTTTATTTCAACTTTGCTGGTTCTTGGCTCAGCATTTGCATAATGAATCTTGGTGGTTCTAGTGGGTTTTGTTCTGTGCTACTTCTCTCCAATACCAGGCTCCTCTTTGGCTTTTGTTTTGCTTGGAATATACTTGTGAAATCTCCTCTTGAAGCACTTTGTGGGAGTTCGGTTGGAAATAGTTTAAATGGCACGAAATCTATGGTGGTATATTTACTTCTTGGTACAACAGGGCCACCGATCAAAAGAAGAAAGGGTTTAAGAATCAAGCAAGCTGGTCGAGTCTTGAAAGATCCCGCGATGGAAGTCACTTCGATAATGAAGTTGTTGAAGAGCTTTTGCGATTATTCACATTGGAATTATGCTGTGTTTTGGAAGCTTAATCACCATTTTCCAACATTAGGATTTCAAAATTATGTATCTGGTGTCTCTGACACAAGGCTCATTATTGTTAGGACTTTGACCTGGGAAGATGGATACTATGGTGACGTGAAAACATATGAGGCTGTCGAAAGTGTGTGGAGGGACGTGGTTACTTCAAGTTGTGAAAGTACTCATAGTTCGGGAGAGAAATCGGTTCGATTACTCATGACTGAAATGTCTCATCTAAAATACATATTGGGAGAGGGGGTTGTTGGTAAAATAGCTCTTAGTGGGGATCATTGTTGGGTTTTTTCTGAGGATATTTTAACCGGTAAATTCCATGCCGACTTGATGCATGAGTGTCCATATGAATGGCTTCTTCAATTTGCATCAGCCATCAAGACTATTGTGCTTGTACCGGTTCTTCCACAAGGGGTTTTACAATTCGGCTCGTTTGAAGCGGTTGTTGAAGATCTGGCATTTGTTGCCGATGTCAAGAAGAAATTCAATTCCTTTCATTGTATAGCAGCAAATACTACACTGTTGAGCTTGGATAAAAATATTCAGGATTGGTCAATCTCAGCCTTAAAAGATTGTCTTCTGGATAATTCAGATTTATCATCTTCTGTTACAAATAATATCCTGATAGGTGAACTTTTGGATGGCCTTTCGCTTAATAATGGATCGAGTTTGAATCCAACTGTCCCATCATTTGTTCAGGTTGAAGGTTTTATCTCTAGGAAAAATGAGATCAGACCCATATCAACTGGGGTGTCAAACAATGTTGGTCAGATCGAGATGAAATCAAATCATATGGAAGAAGACATATGGACTTGTTCTCCATGGCTCAATAATGTGGGAGTATTTGGAGAGACTTCTAAGGGAGTATTTTCGTATTCATGTAAAGATATGGTAGAACAACAATTTGAAGGCACTGCCATTGATCATGAAGGTCCTAATAACAAGAGTAGTTTCTTCAATTTCCCCTTAGATTCTGAATTACACAAAGCACTAGGACATGTCGCCAGTAGACAAACTTCTGAATCTGAGTCAAAATGTTTCTCTGTTGAGGATACATACAGTACTAGCTCAACTTTGATATCCGGTAAAAAAGAGCATGATCATGATGCAGAAAATCTTTTGGATGCTGTGATTGGCAATTTATGCAGTGCCTCAGATGATACTTCATCATCCTTACCAATAGCATTAACTGCTTCCACTCATCCACAAAGTCATTCCGAGGAAAGCACTTTGATAATGAGTAATGGCAGTACAAGTAGCCATCTTACATCTGCATTTGTGGCCAACATAGATGATTGTGCTGACCTTCTTACATTGGCATCTTTCGATGATAATTCAAGCATATTGCTTGATGGAACGAAGCAGGAAGCTGTTTATAGTCATATGCCGCCTAATGGGGAACCAAAACTCTCTAGCACAGGCAAGAAAAGAGCCAGAACGGGAAATACACCAAGGCCTAGACCAAGAGATAGACAGTTGATAATGGACCGGATGAAGGAACTGCGGGAACTTGTCCCAGATGGTACCAAGTGTAGCATCGACAGCCTTTTAGATCGGACCATAAAGCACATACTGTACTTGAGAAAAATAACAAACCAGGCTGAGAAATTGAAACAATTTGAGCATAAAAAGGTGCCTGAGTTCAAGAAACAGAAAATCAATGGCAGTCATACAGGGAGGAGCTGTGCAATTGACGTCGGAAGTGAACTCCAAGTTTGTCCCATAGTTATAGAAGATCTTGAATGCCCAGGCCACTTGCTCATAGAGATGATATGCAGTGAGCATGGACTTTTCTTAGAGATTGCCCAAGTGATTCGACAGATGGAGCTTACCATCTTGAAAGGTGTTTTAGAAAGCCGTTCAGACACTGCTTGGGCCCGTTTCATTGTTGAGGTTCCCAGAGGCTTTCACAGGATGGATGTTCTATGTCCTTTGTTGCATCTTTTGCAGCTTGGAAGAAACCCATTTCAGGAAGAATCTGATCCTTCCAACCAAAAATAA 2409 0.4043 MSILVLDNLYFNFAGSWLSICIMNLGGSSGFCSVLLLSNTRLLFGFCFAWNILVKSPLEALCGSSVGNSLNGTKSMVVYLLLGTTGPPIKRRKGLRIKQAGRVLKDPAMEVTSIMKLLKSFCDYSHWNYAVFWKLNHHFPTLGFQNYVSGVSDTRLIIVRTLTWEDGYYGDVKTYEAVESVWRDVVTSSCESTHSSGEKSVRLLMTEMSHLKYILGEGVVGKIALSGDHCWVFSEDILTGKFHADLMHECPYEWLLQFASAIKTIVLVPVLPQGVLQFGSFEAVVEDLAFVADVKKKFNSFHCIAANTTLLSLDKNIQDWSISALKDCLLDNSDLSSSVTNNILIGELLDGLSLNNGSSLNPTVPSFVQVEGFISRKNEIRPISTGVSNNVGQIEMKSNHMEEDIWTCSPWLNNVGVFGETSKGVFSYSCKDMVEQQFEGTAIDHEGPNNKSSFFNFPLDSELHKALGHVASRQTSESESKCFSVEDTYSTSSTLISGKKEHDHDAENLLDAVIGNLCSASDDTSSSLPIALTASTHPQSHSEESTLIMSNGSTSSHLTSAFVANIDDCADLLTLASFDDNSSILLDGTKQEAVYSHMPPNGEPKLSSTGKKRARTGNTPRPRPRDRQLIMDRMKELRELVPDGTKCSIDSLLDRTIKHILYLRKITNQAEKLKQFEHKKVPEFKKQKINGSHTGRSCAIDVGSELQVCPIVIEDLECPGHLLIEMICSEHGLFLEIAQVIRQMELTILKGVLESRSDTAWARFIVEVPRGFHRMDVLCPLLHLLQLGRNPFQEESDPSNQK 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0277 802 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 116 298 IPR025610 -
Dere12g0277 802 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 627 685 IPR036638 GO:0046983
Dere12g0277 802 MobiDBLite consensus disorder prediction 595 626 - -
Dere12g0277 802 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 614 663 IPR011598 GO:0046983
Dere12g0277 802 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 435 795 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0277 Dere-ChrDere12 4712671 4718673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0277 507 786 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 38.276 1.97e-51 189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0277 12 4712671 4718673 Dere12g0277 12 4712671 4718673 ECH