Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0275 ATGGAGCAACAACATAGGGTTACAACCTTAATCTTCTCAATGGCGATGCTACTGTCTTGTGCCGGCGGTGGCTCCATACGGCGTTGCGGCAACTGCGGGTTGAATCCGGTTCCATACCCGTTAAGCACGGGACCCGACTGTGGTGACCCGTCGTACAAAATAAGGTGCACTGCAGGCACGTTGTGGTTGGACGCTCTCGGTGGATCATCCTACACCATCAAGTCCATTGACCCGAAAAACAGACGGGTCATTATCCGACCAGCAAGTATCACTCAAAGCACGTGCGTGTCCACGGATTTCCACAGCGAAGGCGTACACCTGAACGGGACCCTTCCCTTCAAGATCACCACCAACAACACCGTCTTTCTGTACAACTGTACGAAAGAGATACTGAAATTGCAAGCTCACATAAACTGTTCAACCAATAGCCTGTGTCACAGCTACATTGAGGACCACGCCGAAGCCCGCGGAGCGTGCGTGCGCGTAGGCATGTGTTGTAGCTTCATGACGGATGAGTCCTACTCCTACATGGTGAGGGTGCATGGAGGAGGGTGTGCTGCGTATCAGAGTTTTGTGAATCTGGATGTGGCGGTGGCACCGCCGGCGAAGAGGTGGCCGGAGCCTGGGATGGAGCTGGAGTGGGTGTCGCCGGTGGAGCCAGTTTGTAAGGGGCCGATGGATTGCAAGGAGCTGTTGAACTCGAAGTGTTTGGCGGATCCGACCCGTGTTGGGGGACTGAGGTGTTTATGCAGTGCTGGCTTCATGTGGGACCCCATGAATGGTTTGTGTCAAACTAGTCAAAGTCCAAATGTTAAGTGTGCAAGACATGGAAAAGGTAAAAAATGCAAGCATATGAAGAAAAAGACTATTCTTCTCGCTGATAAGAGCGATGTGTATAGCTTTGGGGTGGTTTTGTTGGAGATTCTTACAAGTGAGAAAGCTATTGATTTTAATAGGGAAGAGGAAAATGTAAACTTGGTGGTCTATGGGAAGAGGATGGTGAAGGAAGAGAGGCTTTTGGAGGTGGTGGATCCGTTGATGAAAGAGGGAGCTAGCAAGTTGGAGTTGGAGACAATGAAGTCTCTGGGATGTCTTGCGGTGGCTTGCTTGGAAGAGCAGAGGCAGAGTCGGCCTTCGATGAAGCAGGTTTCGGATGAGATTGAGTATCTTATTAGTGTTGTTACTAGTAGTGAGGTTTTCAAAACATAA 1209 0.5021 MEQQHRVTTLIFSMAMLLSCAGGGSIRRCGNCGLNPVPYPLSTGPDCGDPSYKIRCTAGTLWLDALGGSSYTIKSIDPKNRRVIIRPASITQSTCVSTDFHSEGVHLNGTLPFKITTNNTVFLYNCTKEILKLQAHINCSTNSLCHSYIEDHAEARGACVRVGMCCSFMTDESYSYMVRVHGGGCAAYQSFVNLDVAVAPPAKRWPEPGMELEWVSPVEPVCKGPMDCKELLNSKCLADPTRVGGLRCLCSAGFMWDPMNGLCQTSQSPNVKCARHGKGKKCKHMKKKTILLADKSDVYSFGVVLLEILTSEKAIDFNREEENVNLVVYGKRMVKEERLLEVVDPLMKEGASKLELETMKSLGCLAVACLEEQRQSRPSMKQVSDEIEYLISVVTSSEVFKT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0275 402 Pfam Wall-associated receptor kinase galacturonan-binding 29 85 IPR025287 GO:0030247
Dere12g0275 402 SUPERFAMILY Protein kinase-like (PK-like) 294 391 IPR011009 -
Dere12g0275 402 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Dere12g0275 402 Gene3D Transferase(Phosphotransferase) domain 1 273 398 - -
Dere12g0275 402 PANTHER WALL-ASSOCIATED RECEPTOR KINASE CARBOXY-TERMINAL PROTEIN-RELATED 15 253 - -
Dere12g0275 402 Pfam Protein tyrosine and serine/threonine kinase 292 384 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0275 Dere-ChrDere12 4680369 4684497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0275 288 402 Receptor kinase-like Gene Family AT5G02070 60.000 1.88e-38 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Dere12g0275 PK_Tyr_Ser-Thr 4.1e-06 CL0016