Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0260 ATGGCGGAGGGTTTTGAGCCCTACCATGTACCGCAGCAAAGCAGAAGAGACAAGCTCAGAGTCGTGTCTCACAACCAGCAATCTCTTCTCCCTCCGGCAGGGTGCGCAGGTTTACTCCCTCTCTACGACCCTTCCCTTATTCCCTCCGATCTGCTAACGTGCGCCAGCAACAATCCTGAATCCTCGAATTTGCAAATAGACCCCGGAGCAATTCAGATTATCAACAACAACCCATTTCTCAATTTTCCCCTCACTCAAACCCTTCGGGCCGAGCCATTGTCTTTATCTCTCTCATCATCACACAATAACTACACCCACCAGGCTAATCTCAACAATAATCTCCCACTTGAGCTGAATCTTCAGAGATATGATGGTGGCTGTGTGAGTATCCCGGCCAACGACGTCGTTTTGAGGAGCTCCGTCGTTCCACTTGGGCCCTTCACTGGTTACGCTTCGGTATTGAAGGGATCGAGGTTTTTGAAGCCAGCCCAGCAATTATTGGAGGAGCTTTGCGATGTTGGGGGTCGTGGAGTTTACGCCGCAGAAAAGATGACGGCGGAGACTTCGTTGATGGAACCTCCCTCGTCGGATACATTCAGCTCCGGCGATCCTCCGCCGCCGCTCGGAGATGGGGGTGAGGGTGGAAAGAAGAAGTCTAGACTATTAACCATGCTTGATGAGGTGTACAGAAGGTACAGGCAGTACTATCAACAGATACAAGCAGTAATAACTTCATTTGAGTATGTTTCGGGCCTTGGTAACGCAGCTCCTTATGCATCCTTAGCTATAAAAGCCATGTCCAAGCATTTTAAATGCTTGAAGAATGTGATCATGGACCAGCTTCAGTTCACAAATAAGGCTCATTTTCAGAATATAAGCAGCAAAAAGGATGAATCCCCGAGGTTTGGGAATGATGATCATAGAGGAGGAGGACCTTACGGCCAAACTAGGGCTATTCAGAGCCCTGAATTATTAGGGCACCAACCAATTTGGCGACCTCAAAGAGGACTACCTGAGCGTGCTGTGACTGTTCTTAGGGCTTGGTTATTCGAGCACTTTCTACACCCTTATCCTACTGATACGGACAAGCTAATGCTGGCCAAACAAACTGGTCTGTCTCGTAGCCAGGTGTCAAACTGGTTCATTAATGCAAGAGTAAGGTTGTGGAAACCAATGGTGGAAGAAATACACATGCTAGAAATACGACAATCTCAAAAGAATCCTCAGACCACAGAAGAACACAAGAAGAACAAATCCAGTACTAGTGACAAGTTTGAAAATGATGCTCCTTATAAACGCATTAGAAATTACGAACCTCCTCATAATATACCAGTGGCGAATCGGCTGCCTTATAATGGAATAAGCAATGTCAGTGATAACCTGCCAGTGAATGTCGGAGCAGTGACCAATAGCGTCTCCCTCACACTGGGTCTCCACCAGAACAATGGCGGGCTTGCTCTATCTGAACCGTTTCCCATGAGTGAAGCGCTCCGTTTTGGCCTTGCCCTAGAGGTACCCAGTAACGAAGACTATGTTATGAATGGTTCTGAATCGCAGAATCGGCATTATGGAAGAGATCAGGTTATTGGAGGGCAACTTTTGCATGACTTTGTTGGGTAA 1620 0.4728 MAEGFEPYHVPQQSRRDKLRVVSHNQQSLLPPAGCAGLLPLYDPSLIPSDLLTCASNNPESSNLQIDPGAIQIINNNPFLNFPLTQTLRAEPLSLSLSSSHNNYTHQANLNNNLPLELNLQRYDGGCVSIPANDVVLRSSVVPLGPFTGYASVLKGSRFLKPAQQLLEELCDVGGRGVYAAEKMTAETSLMEPPSSDTFSSGDPPPPLGDGGEGGKKKSRLLTMLDEVYRRYRQYYQQIQAVITSFEYVSGLGNAAPYASLAIKAMSKHFKCLKNVIMDQLQFTNKAHFQNISSKKDESPRFGNDDHRGGGPYGQTRAIQSPELLGHQPIWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLEIRQSQKNPQTTEEHKKNKSSTSDKFENDAPYKRIRNYEPPHNIPVANRLPYNGISNVSDNLPVNVGAVTNSVSLTLGLHQNNGGLALSEPFPMSEALRFGLALEVPSNEDYVMNGSESQNRHYGRDQVIGGQLLHDFVG 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0260 539 MobiDBLite consensus disorder prediction 400 429 - -
Dere12g0260 539 Pfam Homeobox KN domain 348 387 IPR008422 GO:0003677|GO:0006355
Dere12g0260 539 Gene3D - 334 396 - -
Dere12g0260 539 ProSiteProfiles 'Homeobox' domain profile. 328 391 IPR001356 GO:0003677
Dere12g0260 539 MobiDBLite consensus disorder prediction 294 313 - -
Dere12g0260 539 CDD homeodomain 331 392 IPR001356 GO:0003677
Dere12g0260 539 MobiDBLite consensus disorder prediction 190 217 - -
Dere12g0260 539 SMART prehox3 148 279 IPR006563 -
Dere12g0260 539 FunFam BEL1-like homeodomain protein 9 334 396 - -
Dere12g0260 539 SUPERFAMILY Homeodomain-like 333 398 IPR009057 -
Dere12g0260 539 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 419 - -
Dere12g0260 539 Pfam Associated with HOX 153 277 IPR006563 -
Dere12g0260 539 SMART HOX_1 331 395 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0260 Dere-ChrDere12 4414240 4419287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0260 1 539 Homeobox Transcription Factor Family AT5G02030 44.371 1.52e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere12g0260 POX 3.1e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0260 12 4414240 4419287 Dere12g0260 12 4414240 4419287 ECH