Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0245 ATGGGGGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTTCCACTCCCACCTCAAACCTTCCGTCCTTGAGTCCTCCGACCTGGAAAATGGTGGGAAAAGTGAGCGAGAAATGTGGCCCAGTTTTGGAGAGTTCAGCTTGGAGCAATTGAAGGTTGCCACAAATGGGTTCTCCTCCGAAAACATAGTGTCCGAGCACGGCGAAAAAGCTCCCAATGTCGTTTACAAGGGGAAGCTCGATAATGGCCACTTCATCGCCATCAAACGCTTCAACAAATTCGCTTGGCCCGATTCTCGCCAATTCCTCGAGGAAGCTAAGCAAGTGGGGAGTCTGAGAAGTGAGAGATTGGCCAACTTGATTGGTTATTGCTATGAAGGGGACGAGAGGTTGCTGGTGGCAGAGTTCATGCCCCATGAAACTCTGGCTAAGCATCTCTTTCACTGGGAGGCACAACCTATGAAATGGGCAATGAGGTTGAGGGTGGCCTTGTACTTAGCTCAAGCTCTAGAGTACTGCAGCAGTAAAGGGAGGGCTCTATATCATGATCTCAATGCATATAGGATCTTGTTTGATCAGGATGGTAATCCCAGGTTGTCTTGCTTTGGGCTCATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAACTTGGCTTTTACACCTCCTGAGTATTTGAGGACAGGAAGAGTGACACCAGAGAGTGTGGTTTACAGTTTTGGAACTCTGTTGCTAGATCTCCTGAGTGGCAAACATATTCCCCCTAGCCATGCACTTGATCTGATCCGTGGCAAAAACTTTTTGATGTTAATGGATTCTGCCTTGGAGGGCCACTTTTCAAAGGAGGATGGAACTGAGTTGGTGCGTTTGGCTTCCCGTTGTTTACAGTTTGAAGCTCGTGAGAGGCCAAATGCAAAGTCCCTTGTTGCATCTCTAATGTCACTTCAGAAAGAAACTGAGGTCCCCTCATATGTTTTGATGGGTATTCGGCTTGAAGCTGCATCCTCAACAAAGCCATCATTGACACCTTTAGGTGAAGCATGTTTGAGACTTGATCTTACTGCCATACATGAAATATTGGAGAAGATAGGATACAAAGATGATGAGGGAATCGCCAATGAGCTTTCCTTTCAATTGTGGACCAGTCAAATGCAGGAGACCTTAAATTTGAAGAAGCATGGAGATACTGCTTTCCGTGCTAAAGACTTTGTCACTGCCATTGATTGCTATACGCAATTTATAGATGGAGGAACCATGGTATCGCCCACTGTGTATGCAAGACGCTGCTTGTCTTACTTGATGAATGGAATGCCACAAGAAGCTCTTGGGGATGCCATGCAAGCCCAAGTGGTTTCACCTGAGTGGCCTACTGCTTTGTATCTTCAAGCAGCTTGTCTTTTCAGCCTCGGAATGGAGAATGATGCACAGGAAACTCTCAGAGATGGGACAAACATGGAAGCCAGAAAGAACAAAAATTTAAAAACTGTATAG 1485 0.4613 MGARCSKFSLCWFHSHLKPSVLESSDLENGGKSEREMWPSFGEFSLEQLKVATNGFSSENIVSEHGEKAPNVVYKGKLDNGHFIAIKRFNKFAWPDSRQFLEEAKQVGSLRSERLANLIGYCYEGDERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKEDGTELVRLASRCLQFEARERPNAKSLVASLMSLQKETEVPSYVLMGIRLEAASSTKPSLTPLGEACLRLDLTAIHEILEKIGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNGMPQEALGDAMQAQVVSPEWPTALYLQAACLFSLGMENDAQETLRDGTNMEARKNKNLKTV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0245 494 Gene3D Tetratricopeptide repeat domain 382 494 IPR011990 GO:0005515
Dere12g0245 494 ProSiteProfiles Protein kinase domain profile. 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0245 494 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 20 489 IPR045845 GO:0004672|GO:0009742
Dere12g0245 494 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Dere12g0245 494 Pfam Protein tyrosine and serine/threonine kinase 73 310 IPR001245 GO:0004672|GO:0006468
Dere12g0245 494 SUPERFAMILY TPR-like 386 479 IPR011990 GO:0005515
Dere12g0245 494 SUPERFAMILY Protein kinase-like (PK-like) 33 320 IPR011009 -
Dere12g0245 494 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Dere12g0245 494 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Dere12g0245 494 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Dere12g0245 494 FunFam probable serine/threonine-protein kinase At4g35230 383 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0245 Dere-ChrDere12 4126844 4132609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0245 44 310 Glycoside Hydrolase AT3G07070 35.254 1.24e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Dere12g0245 PK_Tyr_Ser-Thr 2.5e-25 CL0016