Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0244 ATGTCTTTGAAAATGTCATCAACTACACAGATTTCCCGTGTAGATTTGGAGCAGGGAAGCCACCATAGTGACATGAGTGCTGAGGCCAGTGTTTGCTTCTCTGATGCTGAAGATGGTTCTTGCTATTCCTATTTCTACTCAACAAATGGTGGCTCAATCGATGGGTATAGCTTCGCTTGTGTTTCTGATACTGAAGTCATTGAGGAGGGTGTTCCTGATTCTGGGAGAGCTTCTTCCGTTACTGAATGCTCAATGGAGGTGGAAATTGAAAGTGGGGTTCCTGAAATTAAGGTGCATTTGGCTAAAGTAGAGAGAGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGCCAGGAATCTGGGGTTCCAATTCAATTGGGTTGTTCTTGCAAGGATGATCTAAGTGCTGCTCATAAAATCTGTGCTGAGACCTGGTTCAAGATTAAGGGGAACAGGACCTGTGAGATCTGTCATTCTGTGGCACAGAATGTTTATGGAGTGAATGAGGAGACAACGGAGAATTTAAGTGACAGCAACAATGCTACTGCAGTATCCACAACTCCGGCAGTGGCTCCATCAACAGAAGCTAGAAGATTTTGGCAAGGCCATCGCTTCCTGAATTGCCTGCTTGTTTGTATGGTTATTGCATTTGTCATATCCTGGCTTTTTCACTTCAAGGTGGGATCATCTTAG 696 0.4411 MSLKMSSTTQISRVDLEQGSHHSDMSAEASVCFSDAEDGSCYSYFYSTNGGSIDGYSFACVSDTEVIEEGVPDSGRASSVTECSMEVEIESGVPEIKVHLAKVERDCRICHMGLESDSQESGVPIQLGCSCKDDLSAAHKICAETWFKIKGNRTCEICHSVAQNVYGVNEETTENLSDSNNATAVSTTPAVAPSTEARRFWQGHRFLNCLLVCMVIAFVISWLFHFKVGSS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0244 231 MobiDBLite consensus disorder prediction 1 20 - -
Dere12g0244 231 SUPERFAMILY RING/U-box 104 162 - -
Dere12g0244 231 SMART ringv_2 106 159 IPR011016 GO:0008270
Dere12g0244 231 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270
Dere12g0244 231 MobiDBLite consensus disorder prediction 1 16 - -
Dere12g0244 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 168 IPR013083 -
Dere12g0244 231 PANTHER ZINC FINGER, RING-CH-TYPE 20 228 - -
Dere12g0244 231 Pfam RING-variant domain 107 158 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0244 Dere-ChrDere12 4120080 4123238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0244 47 231 C3H Transcription Factor Family AT5G05830 53.763 1.43e-64 197