Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0242 ATGGAAGTGGAAGAAACAGCCGTTGTCGAGCTCGACGGACACGCCACCGGAGACGGTGGTTGTGGTGGTGGTGACGGCGGTAGTGGGGATGAGGGTTTGACGGCGTTGGGCGATGGAGGTGGAAGTAGCTCCCACGGGGCTAGAGACAGAGTGAAGGGTCCTTGGTCTCCAGAGGAGGACGCCATACTGAGTCGACTCGTCAGCAAGTTCGGGGCCAGAAATTGGAGCTTAATTGCACGCGGGATCGCCGGGAGATCCGGAAAATCCTGCCGGCTCCGGTGGTGTAATCAGCTCGACCCTGCTGTGAAGCGCAAGCCTTTTACTGATGAGGAGGACCGGATCATAGTTGCAGCACATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCTACTTTGAGGCGCCGAGGAGCTGAACTTGATAAGATTAAAGTAGAAGCTTGCAACATAGTGGAAGATGTTAGCTTGGAGAAAGCAAAAGCATCATCAGAAGAAACTCAGTCATGTGGGGATGTTAATTCCTTGAGATCCTCAGAAGGAAGAGATGTCAATTCTGTGGAGAATATGGATGATAAATATGAAGAAAAAGCTCAGACAGTGTGTCAATTAAACCATGAAGTCAAGGATCCACCTACACTCTTCCGACCACTAGCGCGTGTTAGTGCTTTTAGTGTATATAATGCATTGGATGGTTCACAGCCTGCAGCGTCACCCTATAGGCCAGTTCCAATGCAAGGACCTCTTTTTCAAGCATCAAAACCGGGAATTGAAATTTGTAAAATGCTGGAGGGAGTTTATGGTTGTGACCAATCTGTGCCTAACCAGTGTGGCCATGGTTGTTGCGCTGATCTAAATGGTGAAAATCCCAGAAGGTCCTTGCTGGGGCCAGAATTTGTTGAATTTTCAGAGCCCCCATCTTTCCCAAGTTTTGAATTGGCAGCAATAGCTACCGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAAAACAGTAGTGTCAAAATGATGGGTGACCCAGCTGGCAGGGTAATATCTCGTGGATCTCAAGTGAATATTGGCCATTAA 1116 0.483 MEVEETAVVELDGHATGDGGCGGGDGGSGDEGLTALGDGGGSSSHGARDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGAELDKIKVEACNIVEDVSLEKAKASSEETQSCGDVNSLRSSEGRDVNSVENMDDKYEEKAQTVCQLNHEVKDPPTLFRPLARVSAFSVYNALDGSQPAASPYRPVPMQGPLFQASKPGIEICKMLEGVYGCDQSVPNQCGHGCCADLNGENPRRSLLGPEFVEFSEPPSFPSFELAAIATDISNLAWLKSGLENSSVKMMGDPAGRVISRGSQVNIGH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0242 371 Gene3D - 106 152 - -
Dere12g0242 371 CDD SANT 106 149 IPR001005 -
Dere12g0242 371 SUPERFAMILY Homeodomain-like 49 145 IPR009057 -
Dere12g0242 371 ProSiteProfiles Myb-like domain profile. 99 149 IPR001005 -
Dere12g0242 371 SMART sant 103 151 IPR001005 -
Dere12g0242 371 SMART sant 51 100 IPR001005 -
Dere12g0242 371 Gene3D - 51 103 - -
Dere12g0242 371 FunFam MYB transcription factor 52 103 - -
Dere12g0242 371 CDD SANT 54 96 IPR001005 -
Dere12g0242 371 MobiDBLite consensus disorder prediction 181 202 - -
Dere12g0242 371 ProSiteProfiles Myb-like domain profile. 47 98 IPR001005 -
Dere12g0242 371 MobiDBLite consensus disorder prediction 181 198 - -
Dere12g0242 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 98 IPR017930 -
Dere12g0242 371 FunFam Transcription factor MYB44 106 152 - -
Dere12g0242 371 MobiDBLite consensus disorder prediction 1 55 - -
Dere12g0242 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 153 IPR017930 -
Dere12g0242 371 Pfam Myb-like DNA-binding domain 55 112 - -
Dere12g0242 371 PANTHER MYB PROTEIN-RELATED 52 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0242 Dere-ChrDere12 4099832 4104160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0242 41 371 MYB Transcription Factor Family AT3G09230 51.320 1.54e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere12g0242 Myb_DNA-bind_6 1.1e-15 CL0123