Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0226 ATGCTTCAGATTCGTCTTAGCAAGTTGCCAGCCTCAGAAAGTTCAGCAGGGGCGAGGCCCTCCCCTGTTGAGACTGCTATTGCATGCCCTGACCATCTAGTCCTGGCGGATCTTCCTGTTGCGAAGGGCATTGGTGCAGCCACTGCCACTTCCCTTGTTAAGACTTTGGGCCGGAGGTCTCGCCGTCAGCTTGGCGAGAGAGTTCATTTCTGTGTTCGTTGTGATTTCCCAATTGCAATCTATGGACGTTTGAGCCCTTGCGAGCATACCTTCTGTCTTGATTGTGCTAGAAGTGACTCAATGTGCTGCTTGTGTGATGAACGGATTCAGAAGATTCAGACTATAAAACTGATGGAAGGAATCTTTATTTGTGCTGCTCCTCATTGTCTAAAGTCTTTCTTGAAGAAAGCTGAATTTGAATCTCACATCCAATACAACCACGCTGACCTTCTTCGGCCCAATGCAGATAGAGATGATGGAAATGAATCAGAGGCACAGAGTGTTAGGCAATCTACAGCATCAGACTCCACTGCTCGAGGTCCCCAGAGGCCAGTGTTTTCTCCTGGTTCAAATTCACAGCTCCATGATTGGGAAGACAAAAGTCGTCGACAGCCAATGAGAGAGCAGGCCCCTTCAAGGCCAATTCTACAGCCAAAGCCACCATTTTTCGGTCAAGCACAAAATCCCCTTTCGGAACCCCAATCAGGCCACACTGGAGCTATTCAACAGGGCCTCCCGCAAAGTTTTGACATGCAGCACACCCCACGTGATCCTTCCCATTTTGTTGAGAGACAACAAGGAGTTGCTTCAGAGACCCCATTTACTGATTATCCCTCCATGCATTCTGCCCAGCCACCCAATTTTGCCATGCGAGTTGATCCAAACCCAATGCTGAATCCTCCTATGCCATTTGGTTATCCCCCTTACCCGCATGAGGGTGTTCAACCATTTTATGCTGCTCCCTATGATATGCCTAGGCAGGACTCATCTTCTGAAATAGGGGCAGAACAGGGTTCATTACTGGGTTACCCAACAGGTCCAGCTAGTGGTCCAAAATTTTCAGCAAATTATCCTCAGCCGTGGAATGCAGGAATGACTGGTCTGCCTTTCGATCAAGCTTAG 1122 0.4866 MLQIRLSKLPASESSAGARPSPVETAIACPDHLVLADLPVAKGIGAATATSLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHTFCLDCARSDSMCCLCDERIQKIQTIKLMEGIFICAAPHCLKSFLKKAEFESHIQYNHADLLRPNADRDDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQLHDWEDKSRRQPMREQAPSRPILQPKPPFFGQAQNPLSEPQSGHTGAIQQGLPQSFDMQHTPRDPSHFVERQQGVASETPFTDYPSMHSAQPPNFAMRVDPNPMLNPPMPFGYPPYPHEGVQPFYAAPYDMPRQDSSSEIGAEQGSLLGYPTGPASGPKFSANYPQPWNAGMTGLPFDQA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0226 373 MobiDBLite consensus disorder prediction 325 355 - -
Dere12g0226 373 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Dere12g0226 373 MobiDBLite consensus disorder prediction 1 20 - -
Dere12g0226 373 MobiDBLite consensus disorder prediction 152 242 - -
Dere12g0226 373 MobiDBLite consensus disorder prediction 165 194 - -
Dere12g0226 373 ProSitePatterns Zinc finger C2H2 type domain signature. 124 147 IPR013087 -
Dere12g0226 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 122 IPR013083 -
Dere12g0226 373 MobiDBLite consensus disorder prediction 227 242 - -
Dere12g0226 373 CDD RING-HC_HAKAI-like 69 118 IPR040380 -
Dere12g0226 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 372 IPR040383 GO:0016567|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0226 Dere-ChrDere12 3896871 3899585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0226 1 365 C2H2 Transcription Factor Family AT5G01160 48.813 1.49e-104 310
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0226 12 3896871 3899585 Dere12g0226 12 3896871 3899585 ECH