Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0213 ATGAACAGGAGAATTGAAGTTCTCTCTCCAGCCTCTTACCTTCAAAACTCCAATTGGTTGTTCCAAGAAACCAAAGGAACGAAATGGACTCCAGAAGAGAATAAGCGGTTTGAGAATGCTTTGGCTTTGTATGATAAAGATACTCCAGATCGATGGATGAAGGTTGCGGCTATGATTCCAGGGAAGACAGTAGGAGATGTGATTAAGCAGTACAAACAACTAGAAGAAGATGTTAGTGTCATTGAGGCAGGGTTGATCCCAGTTGCTGGGTACGATAGTAGTTCCTTCACTTTGGAGTGGGTCAATAACCAAGGCTTTGATGATTTCAAGCCATTCTGTACTGCTGGTGGGAAAAGGGGCTCTTCCGCTCGACCTTCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAGCACAGGCAATTTCTGATGGGTCTCAAGAAGTATGGTAAAGGAGATTGGAGAAACATATCTCGTAATTTTGTGACAACAAGAACACCAACCCAAGTTGCTAGTCATGCTCAGAAGTATTTCATCAGGCAGCTTACAGGAGGCAAGGATAAGAGGAGATCCAGCATCCATGACATCACAATGGTCAACCTTCCAGACACCAAGTCTCCTCCTTCATCAGACAGTCACAGACCTTCTTCTCCTGATCACTCAATGAAGGTTGTGAATTCGCAGAAGAATCCCACTTTCTCCAGCATGGTTAAACAGGAATATGACTCGAAATTTCCATACGAAACTGTGCCAATGGTTTTCAATTCAACAAATGGAAACATGTTTATGGCACCATTTTGCGGGATGCCTCCTGTTGGATCTGGACCACAGGAGCAGTGTTTACTCAGAGGTTCTCTTTATGGATGTCAATTTGGATCTTATGATTCGATTTTTCAAATGCAATCGATGCAACATCATCAGTGA 930 0.4355 MNRRIEVLSPASYLQNSNWLFQETKGTKWTPEENKRFENALALYDKDTPDRWMKVAAMIPGKTVGDVIKQYKQLEEDVSVIEAGLIPVAGYDSSSFTLEWVNNQGFDDFKPFCTAGGKRGSSARPSEQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLPDTKSPPSSDSHRPSSPDHSMKVVNSQKNPTFSSMVKQEYDSKFPYETVPMVFNSTNGNMFMAPFCGMPPVGSGPQEQCLLRGSLYGCQFGSYDSIFQMQSMQHHQ 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0213 309 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Dere12g0213 309 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Dere12g0213 309 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Dere12g0213 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Dere12g0213 309 FunFam transcription factor MYB1R1 134 185 - -
Dere12g0213 309 Gene3D - 134 184 - -
Dere12g0213 309 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 238 IPR043363 -
Dere12g0213 309 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Dere12g0213 309 MobiDBLite consensus disorder prediction 200 228 - -
Dere12g0213 309 Gene3D - 21 88 - -
Dere12g0213 309 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Dere12g0213 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Dere12g0213 309 CDD SANT 135 180 IPR001005 -
Dere12g0213 309 FunFam Transcription factor SRM1 21 88 - -
Dere12g0213 309 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Dere12g0213 309 Pfam Myb-like DNA-binding domain 28 74 IPR001005 -
Dere12g0213 309 CDD SANT 28 74 IPR001005 -
Dere12g0213 309 MobiDBLite consensus disorder prediction 123 137 - -
Dere12g0213 309 SMART sant 25 77 IPR001005 -
Dere12g0213 309 SMART sant 132 182 IPR001005 -
Dere12g0213 309 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Dere12g0213 309 MobiDBLite consensus disorder prediction 117 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0213 Dere-ChrDere12 3696733 3698116 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere12g0213 Myb_DNA-binding 2.4e-12 CL0123