LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere12g0193	ATGATTGGCAATTGCTTCGGTTCCTTGAATTGTTTTAAAGGGACGAATGATCCTGCTGGCCAGTCAAATGAACAAGTGATTACAACTAAAACTTTTAGTTATAACTTGTTGAGATCAGCAACAAGAGATTTTCATCCATCGAGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAATTCTAAGGGATGGTACTCAAGTTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAAGGAACAAATGAATTTATGACAGAAATTGATATTATATCAAATATACAACATCCAAACCTTGTGCAACTAATTGGCTGCTGTGTTGAGGGCTACCATCGGATATTGGTGTATGAATTTCTGGAAAACAATAGCCTTGCGAGTTCTTTGCTTGGTTCTAAAAGCAAATGTGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATCTGTCGTGGTACAGCTTCTGGTCTTGCATTTCTTCATGTAGAGGCTCAACCAAACATAGTTCACAGAGATATCAAGGCTAGTAACATACTGCTTGATGGGAACTTTAATCCTAAAATAGGGGATTTTGGCCTGGCAAAACTTTTCCCTGACAATGTCACTCATGTTAGTACTCGAGTGGCAGGAACTGTCGGATATCTTGCGCCAGAATATGCACTTCTAGGACAACTTACAAAGAAGGCGGATGTGTACAGTTTCGGGGTTCTCATGCTTGAAATAATCAGTGGTAAAAGTAGTAGTAAAGCTGCATTTGGAGAGAATCTATTGGTTCTAGTGGAATGGGCTTGGAAGCTGAAAGAAGAAAACAGGCTTCTGGACATTGTTGATCCTGAACTTACTGAATATGATGAGATCGAGGTGTTACGTTTCATTAAGGTTGCTCTGTTCTGTACTCAAGCAGCTGCACAACACAGACCCACCATGAAGCAAGTGATAAAAATGCTTACCAAGGATGTGCATTTGCATGAGGAGGCATTGACTGAACCTGGAGTTTATAGGTGGAATACCTCGAAAAAGTTGGGCAATACTTTGGATGAGTCGTCATCTTCTCAAGCAAACGAGTTCGGAAGTTCCAAAAATCCATACGGGACATCAATCCACTACAGTGTTACCGATTTCGAGACTGAGATGCTTCCTAGGTGA	1140	0.4114	MIGNCFGSLNCFKGTNDPAGQSNEQVITTKTFSYNLLRSATRDFHPSSKIGGGGYGVVYKGILRDGTQVAIKSLSVESKQGTNEFMTEIDIISNIQHPNLVQLIGCCVEGYHRILVYEFLENNSLASSLLGSKSKCVALDWPKRAAICRGTASGLAFLHVEAQPNIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEIISGKSSSKAAFGENLLVLVEWAWKLKEENRLLDIVDPELTEYDEIEVLRFIKVALFCTQAAAQHRPTMKQVIKMLTKDVHLHEEALTEPGVYRWNTSKKLGNTLDESSSSQANEFGSSKNPYGTSIHYSVTDFETEMLPR	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere12g0193	379	FunFam	cold-responsive protein kinase 1	15	119	-	-
	Dere12g0193	379	CDD	STKc_IRAK	62	316	-	-
	Dere12g0193	379	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	166	178	IPR008271	GO:0004672\|GO:0006468
	Dere12g0193	379	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	29	349	-	-
	Dere12g0193	379	SUPERFAMILY	Protein kinase-like (PK-like)	23	314	IPR011009	-
	Dere12g0193	379	SMART	serkin_6	44	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere12g0193	379	ProSitePatterns	Protein kinases ATP-binding region signature.	50	72	IPR017441	GO:0005524
	Dere12g0193	379	Gene3D	Transferase(Phosphotransferase) domain 1	120	328	-	-
	Dere12g0193	379	Pfam	Protein kinase domain	45	312	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere12g0193	379	Gene3D	Phosphorylase Kinase; domain 1	13	119	-	-
	Dere12g0193	379	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	120	326	-	-
	Dere12g0193	379	ProSiteProfiles	Protein kinase domain profile.	44	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere12g0193	Dere-ChrDere12	3382534	3388055	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere12g0193	31	365	Receptor kinase-like Gene Family	AT1G56120	49.851	1.41e-107	334

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Dere12g0193		Pkinase	2e-45	CL0016