Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0190 ATGATCGTCATCCACTCCAGTGGTAGCCAGTGGAAATTCTTGTCGTTCTACCTTTTTGCTTCTAGCCTTTTCTCGGCCATTGGTACTATACCCGCTTTGATTCTCTGTTTTTTGTTCGGTCCTGCTTCGCGTGATTGTTCCTCTGGTTTTCCATTTCTTGAAAGATGTATCTATGAAAGTCTGAACTATGCTGTTGCTGTGGCTCGTTATACTTACAATCTTAGTACAGAAATTCAAACCATGAAGGCAAGCAAGGGGAAGAGGGCAGTAAAGAACTCAAAGGAAGCACTGAAGCCAGTTGATGATCGAAAGGTTGGCAAGCGAAAGGCTGCATCAAAACCTGACAAGAGTAGCACACGGAAGGCCAACAAAGAGAGGAATGCCAAGAAAGATCCCAACAAACCGAAAAGACCGCCTAGTGCTTTTTTCGTCTTCCTCGAGGAGTTCAGAAAGACCTTTAAGGCAGAAAATCCTAATGTGAAGGCTGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCATGACTAGTGCTGAAAAAGCACCATATGAAGCCAAAGCTGCAAAAAAGAAAGCTGAATATGAAAAAGTTATCAATGCATATAATAAAAAGCAGGCAAGCCCAGCTGATGACAGAGATGAGGAGTCAGACAGGTCCAAGTCTGAAGTGAATGATGAAGAGGATGAAGCCAGTGGAGAGGAGGGGCACCAAGAAGAGGAAGACGAGGAGGATGAAGAAGAGGATGATGAAGAGGATGACTGA 768 0.4427 MIVIHSSGSQWKFLSFYLFASSLFSAIGTIPALILCFLFGPASRDCSSGFPFLERCIYESLNYAVAVARYTYNLSTEIQTMKASKGKRAVKNSKEALKPVDDRKVGKRKAASKPDKSSTRKANKERNAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSAVGKAGGEKWKSMTSAEKAPYEAKAAKKKAEYEKVINAYNKKQASPADDRDEESDRSKSEVNDEEDEASGEEGHQEEEDEEDEEEDDEEDD 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0190 255 SMART hmgende2 134 205 IPR009071 -
Dere12g0190 255 Gene3D High mobility group box domain 117 251 IPR036910 -
Dere12g0190 255 MobiDBLite consensus disorder prediction 167 255 - -
Dere12g0190 255 CDD HMG-box_AtHMGB1-like 136 181 - -
Dere12g0190 255 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 135 204 IPR009071 -
Dere12g0190 255 MobiDBLite consensus disorder prediction 89 139 - -
Dere12g0190 255 MobiDBLite consensus disorder prediction 89 136 - -
Dere12g0190 255 MobiDBLite consensus disorder prediction 208 227 - -
Dere12g0190 255 Pfam HMG (high mobility group) box 135 204 IPR009071 -
Dere12g0190 255 SUPERFAMILY HMG-box 128 207 IPR036910 -
Dere12g0190 255 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 84 243 IPR031061 -
Dere12g0190 255 MobiDBLite consensus disorder prediction 228 255 - -
Dere12g0190 255 MobiDBLite consensus disorder prediction 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0190 Dere-ChrDere12 3327118 3331035 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere12g0190 HMG_box 4.6e-23 CL0114