Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0189 ATGCGGAAGTCTTCCAAGGATTCCCTCAAAGCTCTTGAAGCTGATATCCAGTTCGCCAATACCATAGCTTCTGATTATCCAAGAGACTGTGATGGTGCATGCCTCCAAATGAGACTGTCCTATAGTCCAGCTGCTCGATTTTTCCTTTTACTGGTTCCGTGGACTGATTGCCACCTTGCTGGAGCCTTGGGATTGCTTAGAATTCTCATATACAAGGCATACGAAGATGGGAAGACAACAATGTCAGTTTATGAAAGAAAAGCAAGCCTGAAGGAGTTCTATGGTGTGATCTTTCCCTCTTTATTGCAACTACAAAGAAGAATCACTGATGTTGACGACAGGAAACAAAAAGATTTATGTGCTACTAGGTATAAGTCAAAAGATGCGATAAGTGAAGGAAAGATCTCTGAAATTGACATAGAGAGAGAAGATGAATGTGGCATTTGCATGGAGATAAACAGCAAGGTTGTATTGCCCAGATGCAATCACTCAATGTGCATGAAATGTTACCAAGACTGGCATGCTCGGTCTCAATCTTGCCCATTCTGTCGTGGAAGTCTGAAAAGAATTAACTCAGGTGACCTTTGGATCTACATGAGGAGCACTGAGATAGATGACATGGATTTCATCACCAAGGAGAATCTTAACAGACTATTTATGTACATTGAAAAGTTGCCTCTCATTGTTCCAGATCCTATTTTCATGTCTTATCCTCAGCGCTGGTGGAATGTGCTGGTCAAAAGAATAAACAAGAAAAAAAGTGGTGGTATTGGGAAGAACATGGCCGTTGTTGGAGTCCTTGCTTTACAGGGATCTTTCAACGAGCACATAGCAGCCCTTAGGAGGATAGGGGTGAAAGGGGTGGAGATTAGGAAGCCAGAACAGCTTAAAAATGTCACTTCTCTTATCATTCCTGGAGGAGAGAGCACCACCATGGCGAAGCTCGCTGAGTACCACAACCTGTTTCCTGCGCTAAGGCAGTTTGTTAAAATGGGAAGGCCTGTTTGGGGAACTTGTGCAGGGCTTATATTCTTGGCAAATAAAGCAACAGGACAGAAAACCGGTGGACAACAACTAATTGGAGGACTTGATTGCACTATCCAAAGAAATTTCTTTGGCAGCCAGATTCAAAGCTTTGAAGCAGAGCTTTCAGTACCAGTGCTTGCATCCAAGGAAGGTGGCCCTGAAACATTTCGCGGAGTATTTATTCGTGCTCCAGCAATTCTTGAAGTAGGGCCGGAAGTTCAAGTACTGGCTGATTGTCCTGTCCCTTCTAAGAGATTGTTTGGTTCAGATTCCTCTCTTGAAGATCAAAAGGAGAATGTTGAGGAAGAAAGTAAAGTTATAGTTGCTGTGAGACAAGGGAACTTACTAGGGACAGCTTTCCATCCTGAATTAACAGCAGATACTCGATGGCATAGTTATTTCTTGAAGATGGCAAATGAAATTAGAGAAGAGGCCTCAAGTAGCTGTGTCCCAGTTGAACTAGATGTTTGTTATAAACAGCCACCACAGAATGACCTTCCTATCTTTCAATAG 1539 0.4282 MRKSSKDSLKALEADIQFANTIASDYPRDCDGACLQMRLSYSPAARFFLLLVPWTDCHLAGALGLLRILIYKAYEDGKTTMSVYERKASLKEFYGVIFPSLLQLQRRITDVDDRKQKDLCATRYKSKDAISEGKISEIDIEREDECGICMEINSKVVLPRCNHSMCMKCYQDWHARSQSCPFCRGSLKRINSGDLWIYMRSTEIDDMDFITKENLNRLFMYIEKLPLIVPDPIFMSYPQRWWNVLVKRINKKKSGGIGKNMAVVGVLALQGSFNEHIAALRRIGVKGVEIRKPEQLKNVTSLIIPGGESTTMAKLAEYHNLFPALRQFVKMGRPVWGTCAGLIFLANKATGQKTGGQQLIGGLDCTIQRNFFGSQIQSFEAELSVPVLASKEGGPETFRGVFIRAPAILEVGPEVQVLADCPVPSKRLFGSDSSLEDQKENVEEESKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMANEIREEASSSCVPVELDVCYKQPPQNDLPIFQ 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0189 512 PANTHER PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO 261 484 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dere12g0189 512 ProSiteProfiles PdxT/SNO family profile. 263 481 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dere12g0189 512 CDD GATase1_PB 264 477 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dere12g0189 512 SMART ring_2 146 183 IPR001841 -
Dere12g0189 512 Hamap Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 264 479 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dere12g0189 512 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Dere12g0189 512 NCBIfam pyridoxal 5'-phosphate synthase glutaminase subunit PdxT 264 420 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dere12g0189 512 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Dere12g0189 512 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 263 486 - -
Dere12g0189 512 Pfam SNO glutamine amidotransferase family 266 480 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dere12g0189 512 FunFam RING/U-box superfamily protein 125 193 - -
Dere12g0189 512 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Dere12g0189 512 Gene3D - 260 491 IPR029062 -
Dere12g0189 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 192 IPR013083 -
Dere12g0189 512 SUPERFAMILY Class I glutamine amidotransferase-like 263 479 IPR029062 -
Dere12g0189 512 ProSitePatterns PdxT/SNO family family signature. 301 311 IPR021196 -
Dere12g0189 512 FunFam Predicted protein 261 490 - -
Dere12g0189 512 SUPERFAMILY RING/U-box 134 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0189 Dere-ChrDere12 3316426 3325581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0189 90 188 C3H Transcription Factor Family AT5G01960 30.769 1.54e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0189 12 3316426 3325581 Dere11g0189 11 3127431 3130630 CCT
Dere12g0189 12 3316426 3325581 Dere12g0189 12 3316426 3325581 ECH