Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0180 ATGGGAAGTCTTTCGGTGATGGTGAAACCAGTAATAATACTAAGCGTCTTTGTGCCATATGCTTTGATGCTACAAGGGACTGCTTCTTCCTTCCACGTGGACATTGTGTGGTTTGTTTTGAATGTGGAACCAGGTAGGCATTTGGTACGAAGCATACAGGTCCTTCCCTTCCAATTTTTCAGACCGGTGAGTAGACCCACCACACTCCGGCCAGAAATCGCAGAGACGGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCATGGGCGTCGACTACTACAAGATTCTTCAGGTAGACCGAAGCGCCAAAGACGATGATCTCAAGAAAGCCTATAGAAAGCTTGCCATGAAGTGGCACCCTGATAAAAACCCTAACAACAAGAAAGAGGCCGAAGCTAAATTCAAGCAAATCTCCGAGGCTTACGATGTTCTGAGTGATCCACAAAAGCGAGCAGTATATGATCAGTTCGGTGAGGAGGGATTGAAGGGACAGGTACCACCCCCAGGTGCCGGTGGATTTTCCGGTGGACCTGATGGTGGCCCAACAATGTTCCGGTTCAACCCCAGGAGCGCGGATGATATATTTTCAGAGTTCTTTGGTTTTTCAAGTCCCTTTGGTGGAATGGGTGATATGGGTGGTCGTGCCGGTGCTTCTGGGTTTCCTCGTGGCATGTTTGGCGATGATATTTTCACTTCATTTAGGAGTGGAGCTGGAGAGGGCTCTGGGAATATGCCAAGGAAAGGTGCACCCATAGAACGAAACCTGCCGTGTAGTTTGGAGGATTTGTATAAAGGAACGACAAAGAAAATGAAGATTTCGAGGGATGTTACTGATTCCAGTGGGAGGCCCACAACAGTAGAGGAAATTCTTACAATAGAGATCAAGCCAGGTTGGAAGAAAGGTACGAAAATAACATTTCCTGAGAAGGGAAATGAACAAAGAGGGGTTATACCTGCAGACCTTGTCTTTATTATTGATGAGAAGCCTCATAGTGTCTTCAAGCGGGATGGCAATGATCTTATTGTCACCCAGAAGATATCTCTTGTAGAAGCACTGACAGGTTACACAGCACAGCTGACGACACTTGATGGGCGGAATCTTACAGTACCAATCAACTCCATCATTAGCCCCACATATGAAGAAGTTGTTAAAGGAGAGGGTATGCCCATTCCCAAAGAACCTTCCAAGAAGGGAAACTTGAGAATCAAGTTTAATATAAAGTTCCCTGCCAGGCTTACATCGGAGCAGAAAAGCGGCATTAAGCGATTATTGACATCTCCATAA 1281 0.4614 MGSLSVMVKPVIILSVFVPYALMLQGTASSFHVDIVWFVLNVEPGRHLVRSIQVLPFQFFRPVSRPTTLRPEIAETERERERERESMGVDYYKILQVDRSAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQFGEEGLKGQVPPPGAGGFSGGPDGGPTMFRFNPRSADDIFSEFFGFSSPFGGMGDMGGRAGASGFPRGMFGDDIFTSFRSGAGEGSGNMPRKGAPIERNLPCSLEDLYKGTTKKMKISRDVTDSSGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHSVFKRDGNDLIVTQKISLVEALTGYTAQLTTLDGRNLTVPINSIISPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPARLTSEQKSGIKRLLTSP 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0180 426 Pfam DnaJ C terminal domain 250 408 IPR002939 -
Dere12g0180 426 Gene3D - 329 408 - -
Dere12g0180 426 PRINTS DnaJ domain signature 148 167 IPR001623 -
Dere12g0180 426 PRINTS DnaJ domain signature 92 110 IPR001623 -
Dere12g0180 426 PRINTS DnaJ domain signature 110 125 IPR001623 -
Dere12g0180 426 PRINTS DnaJ domain signature 128 148 IPR001623 -
Dere12g0180 426 FunFam DnaJ subfamily B member 13 329 409 - -
Dere12g0180 426 FunFam Dnaj homolog subfamily b member 246 327 - -
Dere12g0180 426 CDD DnaJ_C 248 411 - -
Dere12g0180 426 SUPERFAMILY Chaperone J-domain 89 183 IPR036869 -
Dere12g0180 426 FunFam DnaJ subfamily B member 13 89 208 - -
Dere12g0180 426 ProSitePatterns Nt-dnaJ domain signature. 133 152 IPR018253 -
Dere12g0180 426 Pfam DnaJ domain 90 153 IPR001623 -
Dere12g0180 426 Gene3D DnaJ domain 88 208 IPR036869 -
Dere12g0180 426 SUPERFAMILY HSP40/DnaJ peptide-binding domain 250 329 IPR008971 GO:0006457|GO:0051082
Dere12g0180 426 ProSiteProfiles dnaJ domain profile. 90 156 IPR001623 -
Dere12g0180 426 CDD DnaJ 90 145 IPR001623 -
Dere12g0180 426 Gene3D - 249 327 - -
Dere12g0180 426 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 87 423 - -
Dere12g0180 426 MobiDBLite consensus disorder prediction 159 178 - -
Dere12g0180 426 SMART dnaj_3 89 148 IPR001623 -
Dere12g0180 426 SUPERFAMILY HSP40/DnaJ peptide-binding domain 331 417 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0180 Dere-ChrDere12 3123168 3131949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0180 91 153 C2H2 Transcription Factor Family AT1G74250 38.806 7.00e-09 55.8